Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00174 ATGCCATTTCCTCCAGTTACTTGTAGTCAAAGCCAAATAGTGTGCTCTGGATGTAAACATCTGTTGATGTATCCTGCCGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGTTGTATCTCCTGTGCCAACCTCTGGCTTAACGATGGCTCAGCTGGTATGCAGTGGCTGCCACACCCTGCTCATGTACAGGCGTGGGGCGACAAGTGTACAATGTTCTTGTTGTCGCACTGTAAATGCAGCCTCCAAAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGGGTGCTGCTGATGTACCAATCACTTGGATCAATGAAGATGAACCCTAAAAGTATCAACACTTTCTATTGGTTCCTAATGAAAAAGGAATCTCTTTTAATTAGGATCAAGGAACAGGTGGAGAAAGCGTCGGTGAAAACAGCGGAGGAGAGGAAGATTGTGGAGGAGAGAAGAAAGGCGGCAACGGCGGAGGCAAAGCGGGAGCTACACGAGGCCAAAGCCAGACATGCTGCTCAAAAGCTAAAGAATAGGAAGTCAAAACAAGTACTTGGCGGCCATTTACACCATCACCACCCTCCGGTCGAGGGTGGCGCCGCCGCCACACATCTCGGCGGAGTAAATGTTCCGGCTTATCCTATAGTCAGCCCGGATGGGTACTTTCCCGGACATAAAATTTAA 684 48.98 MPFPPVTCSQSQIVCSGCKHLLMYPAGATSICCALCHVVSPVPTSGLTMAQLVCSGCHTLLMYRRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQSLGSMKMNPKSINTFYWFLMKKESLLIRIKEQVEKASVKTAEERKIVEERRKAATAEAKRELHEAKARHAAQKLKNRKSKQVLGGHLHHHHPPVEGGAAATHLGGVNVPAYPIVSPDGYFPGHKI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1861055 1866761 - ClCG10G001740.2 Cla10g00174 281833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00174 227 MobiDBLite consensus disorder prediction 169 194 - -
Cla10g00174 227 MobiDBLite consensus disorder prediction 172 189 - -
Cla10g00174 227 PANTHER PROTEIN LSD1 6 103 IPR040319 -
Cla10g00174 227 PANTHER PROTEIN LOL1 6 103 - -
Cla10g00174 227 Pfam LSD1 zinc finger 54 78 IPR005735 -
Cla10g00174 227 Pfam LSD1 zinc finger 15 39 IPR005735 -
Cla10g00174 227 Pfam Late embryogenesis abundant (LEA) group 1 131 175 IPR005513 GO:0009793
Cla10g00174 227 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 51 79 IPR005735 -
Cla10g00174 227 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 12 39 IPR005735 -
Cla10g00174 227 Coils Coil 141 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00174 - - - csv:101209395 199.904
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00174 Cla-Chr10:1861055 Cla09g01148 Cla-Chr9:13283809 1.14E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g645 . . . . . . Bma07g00956 . . . . . . . . . . . . . . . . . Cla10g00174 Cam10g0175 Cec10g0183 Cco10g0184 Clacu10g0179 Cmu10g1026 Cre10g0431 . . . . . . . . . . . . . . . . . . Cmo19g00476 . . . . . Cpe15g00357 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003240 1 4 1 2 2 2 1 2 2 1 2 2 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 4 1 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61818 PF03760 LEA_1 1.10E-06 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00174 Cla_Chr10 FPKM 3.359327 4.378554 12.35329 13.849798 5.616752 6.112519 5.612245 12.024523 11.689532 13.976321