Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00185 ATGGTTTGCACTGCTAATGATTTACATGGGTGGAAAGATTTTCCAAAGGGGCTTAGAGTTCTCCTCCTTGATGGAGACAGCAGTTCTGCTGCTGAGATAAAAACAAAGCTTGAGGAAATGGAGTATGTTGTTGTGACTTACTGCAATGAGAATGATGCATTGTCAGCCATTTCGAGCAAACCCGAAACCTTTCATGTTGCCATTGTGGAGGTAACAACAAGTAATCACAACGGGAATTTTAAGTTTCTTGAAGCTGCTAAGGACTTGCCTACCATTATGATTTCAAATATCCATTGCCTAAGCACGATGATGAAGTGCATAGCACTTGGTGCGATCGAGTTCCTTCAGAAACCGCTCTCTGAGGACAAATTGAGGAATATTTGGCAACATGTTGTTCATAAGGCATTCAATGCAGGCGGTAGTCCTGTCCCCAATTCTTTAAAGCCTATTAAAGAATCCGTTGCCTCCATGCTGCATCTAGAATTAGAAAACAGCGAAAACGAGAATCAAATCCAAAAAGAGTTAGAAATATCGAGCCGCAATGATGACAATGATCATGAACTACTAGAAGGAAGTGATAAGTATCCAGCTCCTTCAACTCCTCAGCAGAAGCATGGAATGCGACTAGTGGATGATGGTGACTGCCATGATCAATTGAACAGTTCGCTCGAGAAAGAGTGCGGGGAGCAAGATGGGGAGTCAAAATCTGTCGAAACTACTTGTATCAATTCACTTGGTGAAGGTACTTCTCAAGTGGAGAACTCTCAGTTACCTGACCAAGAAGGAATAAAAGAAGAAGAGAACTCTGCTGATGGTTGTGGGGCTGCGAGTAACATCGATCACGACACACATGATCGAGACAATATTAGCAGTTCCGAAAAAAACAAGACCAAACCATGCGGTGTCAATAATCCTTGTGGGACAAAAGTTAGTAGGAAGAAGCTGAAGGTAGACTGGACGCCCGAACTGCACCGAAAATTTGTACAGGCAGTAGAACAACTTGGAGTGAATCAAGCAATTCCTTCTCGAATTCTTGAGCTGATGAAAGTTGAAGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAGTATCGAATGCATAAGAGGCACATCTTGCCAAAAGAAGAAGATGGGAGTTGGTCTCATTCAAAGGATCCAATGAAGAAGAACTACTATCCACAAAGACCCGTGATGGCCTTCCCCCCTCCTTATCATTCAAATCATATAATGCCAGTTGCTCCAATCTACCCGCCGTGGGGTCATATGGCTTGCCCCTCGCCCGGTGTCCAAATGTGGGTGCCACCCGGTTATCCGCCATGGCGACCACCCGAAATTTGGCCATGGAAGTCCTATCCTGGGATGCATGCTGATACATGGGGTTGCCCTGTGACACCACCTCCTCATAGTCCTCTCTCTTCTCATCCTCAACAGCATATTTCAAGATTTGAAAGCACTGATCCATACGATAAAAGCTACGGCATTGCATTCAGTCCTATCGATCTTCAACTGGCTGATGAAGAAATTGACAAAGTGGTGAAAGAGGCAATCAGCAAGCCATGGTTGCCATTGCCTTTGGGGTTAAAGCCACCTTCAACAGAAAGTGTACTGTCTGAGCTCTCAAGACAAGGCATCTCAACCGTTCCTTCTCACATCAATGGCTCTAAACTACTCCAATGA 1680 44.52 MVCTANDLHGWKDFPKGLRVLLLDGDSSSAAEIKTKLEEMEYVVVTYCNENDALSAISSKPETFHVAIVEVTTSNHNGNFKFLEAAKDLPTIMISNIHCLSTMMKCIALGAIEFLQKPLSEDKLRNIWQHVVHKAFNAGGSPVPNSLKPIKESVASMLHLELENSENENQIQKELEISSRNDDNDHELLEGSDKYPAPSTPQQKHGMRLVDDGDCHDQLNSSLEKECGEQDGESKSVETTCINSLGEGTSQVENSQLPDQEGIKEEENSADGCGAASNIDHDTHDRDNISSSEKNKTKPCGVNNPCGTKVSRKKLKVDWTPELHRKFVQAVEQLGVNQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEDGSWSHSKDPMKKNYYPQRPVMAFPPPYHSNHIMPVAPIYPPWGHMACPSPGVQMWVPPGYPPWRPPEIWPWKSYPGMHADTWGCPVTPPPHSPLSSHPQQHISRFESTDPYDKSYGIAFSPIDLQLADEEIDKVVKEAISKPWLPLPLGLKPPSTESVLSELSRQGISTVPSHINGSKLLQ 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2111246 2115500 + ClCG10G001890.2 Cla10g00185 281844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00185 559 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 556 IPR044825 GO:0003700|GO:0045893
Cla10g00185 559 Pfam Myb-like DNA-binding domain 317 366 IPR001005 -
Cla10g00185 559 Gene3D - 310 372 - -
Cla10g00185 559 MobiDBLite consensus disorder prediction 245 305 - -
Cla10g00185 559 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Cla10g00185 559 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 314 369 IPR006447 GO:0003677
Cla10g00185 559 Gene3D - 18 138 - -
Cla10g00185 559 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 556 - -
Cla10g00185 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 311 370 IPR017930 -
Cla10g00185 559 MobiDBLite consensus disorder prediction 177 192 - -
Cla10g00185 559 SUPERFAMILY CheY-like 16 134 IPR011006 -
Cla10g00185 559 MobiDBLite consensus disorder prediction 177 217 - -
Cla10g00185 559 SUPERFAMILY Homeodomain-like 312 371 IPR009057 -
Cla10g00185 559 MobiDBLite consensus disorder prediction 278 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00185 - - - csv:101215069 1048.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00185 Cla-Chr10:2111246 Cla06g01213 Cla-Chr6:25304932 2.52E-14 dispersed
Cla11g00246 Cla-Chr11:2893201 Cla10g00185 Cla-Chr10:2111246 2.25E-14 dispersed
Cla10g00185 Cla-Chr10:2111246 Cla09g01170 Cla-Chr9:13961074 1.54E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61819 PF00249 Myb_DNA-binding 6.20E-09 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00185 Cla_Chr10 FPKM 2.989802 4.408517 5.772122 4.988769 4.476884 4.211607 6.005549 5.33527 4.911008 4.914551