Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00190 ATGGATTCGCAGCAGAACAATTTGTTTGAAACGGCATCTCAACCCGACACCGGAAACGACGCCTACACATTTCTTGAGTTCAACACACAGGGGGAAGACTTCGATTACCCTGAATTTCGCGATCCTATTAGGTCCCCTGTAGCGTGGCCGACTCCTTCAGATTCGTTAGCGGATCATACGGACCGTGGTGGCGGGTCCGATCACCAGTCTGATGCGTCTCCGGTTTCGGCTGCACCAGGAAGTGCCACGAAAGGCCGGACTGGAGGAGGTCCGGGGAATACCGGCGGTAATAATCAAATGGTTGATGCATTGGCAGCCGGGATGAGTGGGTTGACGTTTGAGGATACTGGGGATGATGATAATTATGAGTTTGGGAAGGGGAATTTCACGGAGCATGCTTGCAGGTATTGTGGGGTTTCGAACCCGGCTTGCGTTGTGAGGTGTAACGTACCCTCGTGCCGTAAGTGGTTCTGCAATTCGCGAGGGAATACGTCTGGGTCGCATATTGTGAATCATCTGGTCCGGGCAAAGCATAAGGAAGTTTGTCTTCACAAAGACAGTCCTCTGGGAGAAACAATTCTCGAGTGTTACAATTGTGGATGCCGAAATGTATTCCTCCTTGGATTTATTTCTGCAAAGACAGAAAGTGTGGTTGTTCTACTCTGTAGGGAACCTTGCTTAAGTGTAAATGCTCTTAAGGATATGAATTGGGACTTGAGTCAGTGGTGCCCTCTAATTGATGATAGGTGCTTCTTGCAGTGGCTGGTTAAGATTCCATCTGAGCAAGAGCAGTTGAGGGCACGGCAAATTAGTGCACAACAAATAAATAAAATTGAGGAACTTTGGAAGACAAACCCTGACGCATCCCTTGAAGATCTTGAAAAACCTGGTGTGGATGATGAACCACAGCCCGTAGCATTGAAATATGAAGATGCTTATCAGTATCAAAATGTATTTGCACCTCTTATCAAGCTTGAAGCTGACTACGATAAAATGATGAAAGAATCTCAGAGCAAGGATAATGTCACCGTACGCTGGGACATTGGCCTTAACAAGAAGAGGATAGCTTATTTTGTCTTTCCAAAGGAGGACAATGAGTTGCGTCTTGTACCTGGAGATGAGTTGAGGCTACGCTATTCTGGTGATGCAGCTCATCCAGCTTGGCACTCTGTCGGACATGTGATCAAGCTAACTGCACAGGAAGAGGTTGCACTTGAGCTTCGTGCAAGCCAGGGGGTCCCAGTTGATGTGGTCCATGGTTTTAGTGTTGATTTTGTGTGGAAAAGTACTAGCTTTGACCGAATGCAGGGAGCTATGAAGACGTTTGCTGTTGACGAGACGAGTGTTAGTGGTTATATCTACCATCACCTATTAGGACATGAAGTGGAGGTTCAGATGGTTCGCAATACACTTCCTCGTCGTTTTGGTGCTCCTGGTCTCCCAGAGCTCAATGCATCCCAAGTCTTTGCTGTTAAAAGTGTTCTTCAGAAGCCAATAAGCTTGATTCAGGGCCCTCCGGGTACTGGAAAAACTGTAACTTCTGCTGCCATAGTGTATCATATGGCCAAACAAGGCCAAGGGCAGGTACTGGTCTGTGCCCCTAGTAACGTGGCTGTGGACCAGCTGGCAGAGAAGATAAGTGCAACTGGGTTGAAGGTTGTTAGGCTATGTGCAAAATCAAGGGAAGCTGTAAGCTCTCCTGTGGAACACTTAACCCTTCACTATCAGGTTCGACATCTTGACACATCGGAAAGAAGTGAACTTCATAAGTTGCAACAATTGAAAGATGAACAAGGGGAGCTGTCTAGCAGTGATGAGAAAAAATATAAAGCCCTTAAGAGAGCAACAGAGAGGGAAATTTCACAGAGTGCAGATGTTATTTGTTGCACATGTGTTGGTGCTGGAGATCCTCGCTTGTCAAATTTTAGATTTCGCCAGGTTCTTATTGATGAGTCTACTCAGGCCACGGAACCTGAATGTCTCATTCCTCTTGTTCTTGGAGCAAAGCAGGCTGTTCTTGTTGGTGACCATTGCCAACTGGGACCTGTCATTATGTGCAAAAAAGCAGCACGTGCAGGGCTGGCTCAGTCCCTCTTTGAACGTCTTGTTCTTCTTGGTGTGAAGCCAATTAGGTTGCAGGTCCAATATCGTATGCACCCATCGCTTTCTGAATTTCCTTCTAACAGCTTCTATGAGGGAACACTACAAAATGGAGTTACCATCAACGAAAGGCAATCAACAGGCATTGACTTCCCATGGCCAGTTCCCAACCGTCCAATGTTCTTCTATGTTCAGATGGGACAAGAGGAGATAAGTGCCAGTGGAACTTCCTACCTAAATAGGACTGAGGCAGCAAATGTAGAAAAAATCGTGAGCACTTTCTTAAGGAGTGGCGTAGTCCCTAGTCAGATTGGAGTTATCACACCGTATGAGGGGCAAAGAGCTTACATTGTGAACTATATGTCAAGGAATGGTGCTCTCAGACAGCAACTTTACAAAGAAATTGAGGTTGCAAGCGTGGATTCATTTCAAGGAAGGGAAAAAGATTACATCATATTGTCATGTGTGAGGAGTAACGAACATCAGGGCATTGGATTCCTTAACGATCCTCGCAGGCTCAATGTGGCTTTAACACGAGCTCGATATGGTATCGTCATTCTTGGAAACCCAAAGGTTTTGAGTAAACAACCACTGTGGAATAGCTTATTGACACATTACAAGGAACATGAGTGCTTGGTTGAGGGTCCCTTGAATAATTTGAAACAAAGCATGATTCAATTTCAGAAGCCTAAGAAGATATACAATGATCGGCGTCTTTTCTTTGCTGGTGGACCTGGAGTTGTGCCAAATGATAATTTTGGACCTGTTGCCCCATCTGGCCCTAATGCTGATAGAAGAAGTAGTCGGGGTAGAGGTTCGTACTTCCCTCCTCACCTGCCGAATGGTGCCCAGAAGCCTGGAGTGCATGCATCTGGTTATCCTATGCCTCGAGTTCCCCTCCCCTCATTTCATGGTGGTCCCCCGCAGCCGTATGCAATTCCAACTCGTGGAGCTGTACACGGACCAGTTGGTGCTGTTCCTCATGTTCCTCAACCAGGAAGTAGGGGTTTCGGGGCAGGGCGTGGAAATGCAGGTGCTCCTATTGGTAGTCAGCTTCCAAATCAGCAAGGCTCTCAGCAAAATATTGGAAACCTTGGTTCCACTTTTAACTTTCCTGGTTTGGAGAGTCCCAATAGCCAACCATCAGTTGGTGGTCCATTGTCTCAGCTTGGGTTTGTTAACAATATGCCTGTTCAGCCACCTACTCAAACATTTCGCGATGGGTACTCCATGGGAGGAATTTCTCAGGACTTCTTGGGCGATGACTTTAAAAGCCAGGGATCACATGTTCCATATAATGTCACTGATTTCTCCACTCAGGCATCTCAAACTGGATATCCCATTGATTATGTTAGTCAAGGAGCGCAGGGTGGCTTTCCAGGGAGCTTCCTGAACCAGAATTCTCAATCTGGATATTCCCGTTTTGGAACAGGAAATGATTTCATGTCACAGGACTACATGAACCATGGTTCACAAGGTTTATTTACTCAAGTTGGTTTCAGCGATCCCTCACTAGATGAAGCCTCCCAAAGTCACTATAATGTGACCAATGCAAACCCCCTACAGTCTCAGCAGGGCATGATGAATTCTCTCTACTCCCAGCCCTTTGCACATTACAATACACAGCCCTCGACCCTGCAGGCTCCACCACAGCAGCAGCCTCAGCAGGGACAGAGCTCTCAAAATCAGAAAATTCACTTTAGTGGTTGA 3810 46.51 MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADHTDRGGGSDHQSDASPVSAAPGSATKGRTGGGPGNTGGNNQMVDALAAGMSGLTFEDTGDDDNYEFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDVVHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVSTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNFGPVAPSGPNADRRSSRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPLPSFHGGPPQPYAIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSQLPNQQGSQQNIGNLGSTFNFPGLESPNSQPSVGGPLSQLGFVNNMPVQPPTQTFRDGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQASQTGYPIDYVSQGAQGGFPGSFLNQNSQSGYSRFGTGNDFMSQDYMNHGSQGLFTQVGFSDPSLDEASQSHYNVTNANPLQSQQGMMNSLYSQPFAHYNTQPSTLQAPPQQQPQQGQSSQNQKIHFSG 1269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2151110 2162741 + ClCG10G001940.2 Cla10g00190 281849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00190 1269 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Cla10g00190 1269 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 108 1045 - -
Cla10g00190 1269 MobiDBLite consensus disorder prediction 1034 1085 - -
Cla10g00190 1269 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Cla10g00190 1269 Gene3D - 446 716 IPR027417 -
Cla10g00190 1269 CDD 1B_UPF1-like 338 425 IPR040812 -
Cla10g00190 1269 MobiDBLite consensus disorder prediction 1238 1269 - -
Cla10g00190 1269 Gene3D - 338 426 - -
Cla10g00190 1269 CDD DEXXQc_UPF1 482 717 - -
Cla10g00190 1269 Pfam AAA domain 583 685 IPR041677 GO:0004386
Cla10g00190 1269 Pfam AAA domain 695 890 IPR041679 -
Cla10g00190 1269 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Cla10g00190 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 912 IPR027417 -
Cla10g00190 1269 MobiDBLite consensus disorder prediction 1048 1085 - -
Cla10g00190 1269 PANTHER DNA2/NAM7 HELICASE FAMILY 108 1045 IPR045055 -
Cla10g00190 1269 CDD SF1_C_Upf1 718 907 IPR041679 -
Cla10g00190 1269 Pfam Type III restriction enzyme, res subunit 486 550 IPR006935 GO:0003677|GO:0005524|GO:0016787
Cla10g00190 1269 MobiDBLite consensus disorder prediction 1 100 - -
Cla10g00190 1269 MobiDBLite consensus disorder prediction 951 994 - -
Cla10g00190 1269 MobiDBLite consensus disorder prediction 1 26 - -
Cla10g00190 1269 Gene3D - 717 928 IPR027417 -
Cla10g00190 1269 Gene3D - 568 620 - -
Cla10g00190 1269 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00190 K14326 UPF1, RENT1; regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3] - csv:101214107 2508.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00190 Cla-Chr10:2151110 Cla11g00078 Cla-Chr11:1055102 2.21E-38 dispersed
Cla01g00530 Cla-Chr1:5777494 Cla10g00190 Cla-Chr10:2151110 2.55E-57 transposed
Cla04g00033 Cla-Chr4:1074983 Cla10g00190 Cla-Chr10:2151110 4.76E-34 transposed
Cla05g02123 Cla-Chr5:32804199 Cla10g00190 Cla-Chr10:2151110 6.89E-27 transposed
Cla06g00598 Cla-Chr6:7261922 Cla10g00190 Cla-Chr10:2151110 1.90E-45 transposed
Cla09g00157 Cla-Chr9:1608449 Cla10g00190 Cla-Chr10:2151110 3.88E-37 transposed
Cla09g00963 Cla-Chr9:10119919 Cla10g00190 Cla-Chr10:2151110 3.77E-22 transposed
Cla09g00994 Cla-Chr9:10456545 Cla10g00190 Cla-Chr10:2151110 2.75E-24 transposed
Cla10g01633 Cla-Chr10:31976200 Cla10g00190 Cla-Chr10:2151110 6.99E-56 transposed
Cla11g00088 Cla-Chr11:1155038 Cla10g00190 Cla-Chr10:2151110 5.95E-07 transposed
Cla11g00099 Cla-Chr11:1307124 Cla10g00190 Cla-Chr10:2151110 4.01E-10 transposed
Cla11g01503 Cla-Chr11:28675406 Cla10g00190 Cla-Chr10:2151110 1.45E-43 transposed
Cla10g00190 Cla-Chr10:2151110 Cla05g00287 Cla-Chr5:2619972 7.05E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00190 Cla_Chr10 FPKM 3.367511 4.119494 3.429403 3.167952 4.116808 3.981223 4.064769 3.49979 3.401482 3.522372