Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00192 ATGGTGGAATCGGTTGAGTTACCCAGTCGACTCGGAATTCTTCCCTTTAGAAACAAGGTTCTTTTACCAGGCGCCATTATTCGGATTCGATGTACTTCATCCAGCAGTGTGAAATTGGTGGAGCAAGAGTTGTGGCAGCGAGAAGAGAAGGGATTGATTGGTATTCTTCCAGTTCGAGATGATGCTGATGCATCGGCGATAGGCCCTGTGTTATCTCAAGGTGTGGGAAGTGATTCTGGAGATCGTAGCTCGAGGGTTCAATCTGGAACCTCTGATCCACAAAGAGTAGATGGGAAAAATCATCAGGAAGTTATTCAATGGCATTCAAGGGGTGTTGCTGCTCGTGCCTTGCAGCTGTCTAGAGGAGTGGAGAAACCGAGTGGAAGAGTGACATATACAGTTGTGCTAGAAGGTTTATGTAGATTTACTGTCCAGGAACTTAGCACCAGAGGAACATATTATACTGCACGAATATCACCTTCAGAAATGACTAAGGCAGAGATGGAGCAAGTGGAGCAAGATCCAGATTTTGTTTCATTATCTCGACAATTCAAAGCTACTGCAATGGAGCTTATATCCGTTCTTGAACAGAAACAAAAAACTGGAGGGCGGACAAAAGTTCTTTTGGAGACAGTTCCAGTTCATAAACTGGCTGATATATTTGTTGCCAGTTTTGAGATGAGTTTTGAAGAGCAACTATCTATGCTGGATTCAGTTGATTTAAGAGTAAGGCTTTCAAAAGCAATGGATCATGTTGTTATTAACTTGCAACAGTCGATACGTGTAGCAGAGAAGATTACGCAGAAAGTAGAAGGACAGTTATCAAAATCACAGAAAGAATTCCTTTTGCGTCAGCAGATGAGGGCCATAAAGGAGGAGCTTGGTGATGACGATGATGAAGATGATTTGGTTGCCCTGGAAAGGAAGATGCAAAGTGCTGAAATGCCTGCTAATATCTGGAAGCATGCTCAGAGGGAGTTGAGGAGCCTTAAAAAAATGCAACCTCAACAACCTGGATATAACAGCTTGCGAGTTTACCTTGAGCTTCTTGCCGACCTTCCATGGAAAAAGGCTACTGAAGAAAATGAACTAGACTTGAAAGCTGCAAAGGAACGTCTTGACAGTGACCATTATGGTTTGGTTAAGGTCAAGCAACGAATTATTGAATATCTTGCTGTTCGGAAGCTGAAGCCTGATGCAAGAGGGCCTGTGCTGTGCTTTGTTGGGCCACCAGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGCAGAAAATTTGTACGTATATCCCTGGGTGGTGTTAAAGATGAGGCTGATATTAGAGGACATAGGAGGACCTACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTGAAGGTAAGAGTAGCTGTTTGCAACCCAGTCATGCTATTAGATGAGATTGACAAGACAGGTTCTGATGTGCGGGGCGATCCAGCTTCAGCTCTACTGGAGGTTCTTGACCCTGAACAGAACAAAAAGTTCAGTGATCAGTATCCTAATCTAATGGTTTTTATTTTTATTTATTTGTGTACTGCACGCATTTTGGTTATAGAGCTTGCTTTGGTGTTGAGCTTCTGTACTCGGAGTGATTCCTTAACTATGATCAATAGTTATTTGAATGTCCCGTTTGACCTTTCAAAGGTCGTCTTTGTGGCCACTGCTAACAGAATGCAACCTATACCGCCTCCTCTTCTAGATAGGATGGAAGTCATTGAGCTGCCAGGATACACACCAGAGGAAAAACTTAAGATTGCAATGCACCATTTGATTCCACGAGTTTTGGAACAGCATGGGCTAAGCGCTGAATTTCTTCAAATTCCAGAGAGCAAATATAAACTGGAAGAAGTTTTGAGAAACCGCTGTCTTTGCTGTCTCTTAAATCTTGCTTCTGGCTACTTCCCAGTTCCAATTTTACTGCTTTCTCATCTCAGGCTAGGTCTGCATGTGATGCCGTCTGATTATGAGAAATCCATGCACATTTTTACTATTCATGCCGGGCTGCTTTACTTTTCTCTTGTGCTGCCTAGGATGCGCCTAAGTATTTCTCTTTTCCCAATAATAATAATTCTCTTAGGCTTGTTTATTTCCCGTGATCGTACAGCATCTAATGTGTCTGTCTTAATCTCAAAAGTAGGTTTAGTTCCATCTATGGACATGCAGCATCAAGCTATGGTTAAACTTGTGGTTCAAAGATACACCAGAGAGGCTGGTGTACGTAATCTTGAGAGGAATTTGGCTGCATTGGCTCGTGCTGCTGCTGTTAGAGTTGTGGAAAGAGATCAAACTGTCCCATTGAATAAAGATGTGCATCAGGTTTCTTCTCCTCTGTTGGAAAACAGACTTTCTGATGGAGCTGAAGTAGATATGGAGGTCATCCCAATTGGAGCAGATCATGAGATACCGAACCCGTTGAGGATAGCCTCTCCATTGGTTGTTGATGAGGCTATGCTCGAAAAAGTGCTTGGGCCTCCTAGGTTTGATGACAGAGAGGCAGCCGAGCGGGTTGTATCACCAGGGATATCTGTTGGATTAGTTTGGACTGCCGTTGGGGGAGAGGTTCAGTTCGTGGAGGCTACAGCAATGTCTGGGAAGGGAGAATTACATCTCACCGGCCAGCTTGGTGACGTCATTAAAGAATCAGCTCAGATAGCTCTTACCTGGGTCCGAGCGAGGGCAACAGATCTGAAACTGGCATCAGCTTGTGAATCTAATCTTTTGGAGGGTCGTGATATTCATATACATTTTCCTGCCGGTGCGGTGCCTAAGGATGGGCCTTCAGCTGGTGTGACTCTTGTAACAGCCTTGGTTTCACTGTTTGGTCAGAAAAGAGTTAGGGCTGATACTGCAATGACAGGAGAAATGACTCTTAGGGAGCTGGCTCTGGCTAACCAAGATGTGCTCCTTATTCTTGTGCAAGAAGGAAGTTACCCAATTTGCTGCAGAAAGTTAGAATTGGTTTTGCATAAAAACCATGGTATGTAA 3018 43.9 MVESVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDDADASAIGPVLSQGVGSDSGDRSSRVQSGTSDPQRVDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGRVTYTVVLEGLCRFTVQELSTRGTYYTARISPSEMTKAEMEQVEQDPDFVSLSRQFKATAMELISVLEQKQKTGGRTKVLLETVPVHKLADIFVASFEMSFEEQLSMLDSVDLRVRLSKAMDHVVINLQQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDLVALERKMQSAEMPANIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKATEENELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKVRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFSDQYPNLMVFIFIYLCTARILVIELALVLSFCTRSDSLTMINSYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMHHLIPRVLEQHGLSAEFLQIPESKYKLEEVLRNRCLCCLLNLASGYFPVPILLLSHLRLGLHVMPSDYEKSMHIFTIHAGLLYFSLVLPRMRLSISLFPIIIILLGLFISRDRTASNVSVLISKVGLVPSMDMQHQAMVKLVVQRYTREAGVRNLERNLAALARAAAVRVVERDQTVPLNKDVHQVSSPLLENRLSDGAEVDMEVIPIGADHEIPNPLRIASPLVVDEAMLEKVLGPPRFDDREAAERVVSPGISVGLVWTAVGGEVQFVEATAMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLASACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGQKRVRADTAMTGEMTLRELALANQDVLLILVQEGSYPICCRKLELVLHKNHGM 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2168089 2181815 - ClCG10G001960.2 Cla10g00192 281851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00192 1005 Gene3D - 716 838 - -
Cla10g00192 1005 SMART lon_5 10 254 IPR003111 -
Cla10g00192 1005 SUPERFAMILY Ribosomal protein S5 domain 2-like 850 969 IPR020568 -
Cla10g00192 1005 Gene3D - 849 979 IPR014721 -
Cla10g00192 1005 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Cla10g00192 1005 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 725 974 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Cla10g00192 1005 SUPERFAMILY PUA domain-like 11 251 IPR015947 -
Cla10g00192 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 613 IPR027417 -
Cla10g00192 1005 Pfam ATP-dependent protease La (LON) substrate-binding domain 13 251 IPR003111 -
Cla10g00192 1005 Pfam ATPase family associated with various cellular activities (AAA) 405 583 IPR003959 GO:0005524|GO:0016887
Cla10g00192 1005 Gene3D - 586 633 - -
Cla10g00192 1005 Pfam Lon protease (S16) C-terminal proteolytic domain 824 970 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cla10g00192 1005 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 514 - -
Cla10g00192 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 732 838 IPR027417 -
Cla10g00192 1005 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 935 943 IPR008268 GO:0004176|GO:0004252|GO:0006508
Cla10g00192 1005 Gene3D - 2 160 IPR046336 -
Cla10g00192 1005 Gene3D - 305 353 - -
Cla10g00192 1005 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 932 951 - -
Cla10g00192 1005 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 962 981 - -
Cla10g00192 1005 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 850 866 - -
Cla10g00192 1005 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 409 428 - -
Cla10g00192 1005 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 545 625 - -
Cla10g00192 1005 ProSiteProfiles Lon proteolytic domain profile. 847 969 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cla10g00192 1005 Gene3D - 366 585 IPR027417 -
Cla10g00192 1005 MobiDBLite consensus disorder prediction 76 95 - -
Cla10g00192 1005 CDD AAA 386 499 - -
Cla10g00192 1005 SMART AAA_5 401 587 IPR003593 -
Cla10g00192 1005 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 545 625 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Cla10g00192 1005 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 725 974 - -
Cla10g00192 1005 Gene3D - 162 298 - -
Cla10g00192 1005 MobiDBLite consensus disorder prediction 69 99 - -
Cla10g00192 1005 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 514 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00192 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - csv:101213865 1049.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01480 Cla-Chr2:29334731 Cla10g00192 Cla-Chr10:2168089 4.68E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00192 Cla_Chr10 FPKM 141.291367 143.818222 70.178032 66.036865 17.988771 18.06352 18.049526 87.477318 90.644646 92.812927