Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00199 ATGGAGGGTTTAATCAAGGGTCTCATAGATGTTGCAATCGGCCACGACGGCGACGACAACGATCAACAGTCTCGCGACGACCGATCCAGATCCACTTGGGCTCAGGTGGTTACTGGGGAGGAAGATGGGGGAGATCGGAGACAGGGGTATGATCGGAATCGGAGGGACAATGAGGAAGAGGGTCGTTCACGGCGTGAGGAGTGGGAGGTTCAGGGTTCGAGGATTTCTGGTCAACGGCAACAGAGTGAATATGGTAGTGAGCATGGTTACAACAGAAACCAGTGGCCTAAAGAGGAGAGCTCCGAGGAGAAAAATGATGGGTGGGAGACTGTCCACAAAAAGCCGCCTAGGAGACAACACAAGGTGCAAAAAGATAATTGGGAAGGATACAAACGGCCTGCCAGTGAACAAAATTACTCCGATGAGGTGGAAGTTGGTGCTGAGCTAGAACCCTCAGAAGATGAGCTTGCTGATTTGTCCTATGCATGTAACAAGCTTTGGGAACTTGATTTAAATCGTTTGGTACCTGGAAAAGATTATGAAATTGATTGTGGTGAAGGGAAGAGGGTCAGTGGAAGGGAAGATATGGCACAAGGAAGCCTCTTTAGTTGGGTTAGCGAAGACGTATTTAGGAAACCAACATTTTCACGCTTTTGTTCTCTACTTGATAACTACAATCCGTATCAAGGGAGCAAAGAAGTTGTGACACCTGAGGAAAAGCAAGAGCAGGAAGCATTCATTGAAGAAATTAGTAGAACTGCACCAATTAAGTACCTTCACAAGTATCTTTCATCCAAGGGAGTTGCATCCAATAACTATCAAGATTTTAAACGTTTACTGACTAGCCTGTGGTTCGATCTTTATGGTCGGGGTGGAACATCTGGTTCCTCTTCTGCTTTTGAGCATGTTTTTGTGGGAGAAATCAAGCAAAAAGGAGAACAAGAGGTTTCTGGTTTCCACAACTGGCTTCAGTTTTACCTTGAAGAAGCTAAAGGGAATGTTGACTATCAAGGTTACATTTTCCCCCGACGACGTGGCCAGTTTCCTGATTCAGAAACTCAATTGCTTACCATTCAGTTTGAATGGAATGGTGTTCTCAAATCTGTCTCAAGCACTTTAATAGGAGTTAGCCCTGAGTTTGAAGTTGCACTCTATACACTATGCTTCTTCCTTGGTGGAGAGGACAACCATGTTGAGCTCGGACCGTATGCTGTTAATATCAAATGTTATCGATTAGGAAACAAAATCGGGTCTCTCTGCCCGGGCCACGCCGGCGCCGGTGGTGAGATCGCGTCGCCCGACGCCCTTTGCACTCACCGCCGTTACGTTTTGATTTTTTTGTTTGTCAGAAAATTGTGTTCTCCGGCGACGAAGAAAATCAAATCAATGGCGCTTGATGAGCATATGTTCGAAGCTTTAAACCCTTCTCGTTTCATATCATTCTCTTTCCCCAATCCATGTAACTCTCATTCTTCTCTCCGAATTGCCGTGCTCGATTCGCCGATCGAACCCACCGGTTCCCCTTCGGTGGCCGCCATGTTCGTTCCGCCGGGCCTTGAAACCGACTGGATTTTTTCCACGGAATCTGGACACTATCACCTTCTGTTCGATTCCCCTGGAATTTCGCGCTTGATTCTAGTCGGAGATCAAGAATCGGTGACCGGCCATGATTCTCTTCTGATCTACAAGCGTCAGGATTCGGCTTCGACCTGGAGTCGACTGGTGGTAAGTTTACAGCCACTTCTTCTTGCTTTATTTCCCAAATCATGTTTCAAAAATGGTATTCCTGAAGTTCCGATTCTTAGTTTCGTCGATAACGTGATATGTAGTGTAGTTTTAGAGAGATGCATCGGTTCTTCAGTCGGTGAATTTCTGGTTGAGAATGTGGAAATTGAGAGAGAATCATTTGAAACTAGGGAATTTAGGAGACGTTTGAGGTTCAAGAGAATGCCGAACTTGATTCAAACAGAAATTCGTATAATTCCTGAGGCTAATCTTAATCTAGATGGTGTTGAAATTCAAAACATCGAGTTCCAACCAGATACTAGGGTTTTGGTTCATCCTTACTTACCTCCAATGGCAGCAAGCCTTTCATTGATTGCCTCCTCCATTGACGAACAGATTCAAACTGGTCATAGACCGAAAGCCCTGTGTGTTGGAGTTGGGGGTGGGGCTCTGCTTTCCTTCCTTGCAACCCATTTGGATTTTGAAGTTGTGGGTGTGGAAATGGACATGGAGGTTCTCAGAGTTGCACAACAGTATTTTGGATTGGTAGAGAATGAATTTCTTCACATCTCCATTGGAGATGCCACTGAATTTCTTGAAAATGCTTCAAAGTCAAATAAGAAACAGAAGTGTGGATCCTTTGGTGTTCATATGTCTTCTGAGTATGATGTGATCATGGTTGATTTGGATTCAAGTGATGCTCAAAACGGCATGAGTTCGCCGCCATTGGAGTTTGTTGGGAGAGATGTTCTTCTGAGTGCTAGATCAGTTCTTTCTGAACATGGGATTCTTGTAATGAATGTGATTCCTCTTGACAAGTTGTTCTTTGAGACATTGGTAGATGAATTCAGATCAGTTTTTGATGATTTGTTCCAGATAGATGTTGATAATGATGAAAATTTTGTCGTTATTGCTTCTGTGTGCCCAATCAAGTCTTTCCCTAATGTTACAAAGAATGAGATGAACAGCTTTTCATCCAGATTGAGATTACTCCTCTCAGGAGCATACATGGACTCCATAAAAAGGATATGA 2757 44.14 MEGLIKGLIDVAIGHDGDDNDQQSRDDRSRSTWAQVVTGEEDGGDRRQGYDRNRRDNEEEGRSRREEWEVQGSRISGQRQQSEYGSEHGYNRNQWPKEESSEEKNDGWETVHKKPPRRQHKVQKDNWEGYKRPASEQNYSDEVEVGAELEPSEDELADLSYACNKLWELDLNRLVPGKDYEIDCGEGKRVSGREDMAQGSLFSWVSEDVFRKPTFSRFCSLLDNYNPYQGSKEVVTPEEKQEQEAFIEEISRTAPIKYLHKYLSSKGVASNNYQDFKRLLTSLWFDLYGRGGTSGSSSAFEHVFVGEIKQKGEQEVSGFHNWLQFYLEEAKGNVDYQGYIFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLIGVSPEFEVALYTLCFFLGGEDNHVELGPYAVNIKCYRLGNKIGSLCPGHAGAGGEIASPDALCTHRRYVLIFLFVRKLCSPATKKIKSMALDEHMFEALNPSRFISFSFPNPCNSHSSLRIAVLDSPIEPTGSPSVAAMFVPPGLETDWIFSTESGHYHLLFDSPGISRLILVGDQESVTGHDSLLIYKRQDSASTWSRLVVSLQPLLLALFPKSCFKNGIPEVPILSFVDNVICSVVLERCIGSSVGEFLVENVEIERESFETREFRRRLRFKRMPNLIQTEIRIIPEANLNLDGVEIQNIEFQPDTRVLVHPYLPPMAASLSLIASSIDEQIQTGHRPKALCVGVGGGALLSFLATHLDFEVVGVEMDMEVLRVAQQYFGLVENEFLHISIGDATEFLENASKSNKKQKCGSFGVHMSSEYDVIMVDLDSSDAQNGMSSPPLEFVGRDVLLSARSVLSEHGILVMNVIPLDKLFFETLVDEFRSVFDDLFQIDVDNDENFVVIASVCPIKSFPNVTKNEMNSFSSRLRLLLSGAYMDSIKRI 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2309531 2318071 + ClCG10G002040.2 Cla10g00199 281858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00199 918 PANTHER PLACENTAL PROTEIN 11-RELATED 66 421 IPR039787 GO:0004521
Cla10g00199 918 MobiDBLite consensus disorder prediction 12 28 - -
Cla10g00199 918 MobiDBLite consensus disorder prediction 92 113 - -
Cla10g00199 918 SUPERFAMILY EndoU-like 157 421 IPR037227 -
Cla10g00199 918 PANTHER - 66 421 - -
Cla10g00199 918 MobiDBLite consensus disorder prediction 121 138 - -
Cla10g00199 918 Gene3D Vaccinia Virus protein VP39 662 907 IPR029063 -
Cla10g00199 918 CDD AdoMet_MTases 715 841 - -
Cla10g00199 918 MobiDBLite consensus disorder prediction 1 141 - -
Cla10g00199 918 CDD XendoU 155 418 IPR018998 GO:0004521
Cla10g00199 918 ProSiteProfiles Eukaryotic uridylate-specific endoribonuclease (EndoU) domain profile. 155 425 IPR018998 GO:0004521
Cla10g00199 918 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 706 884 IPR029063 -
Cla10g00199 918 MobiDBLite consensus disorder prediction 40 72 - -
Cla10g00199 918 MobiDBLite consensus disorder prediction 73 89 - -
Cla10g00199 918 Pfam Endoribonuclease XendoU 159 418 IPR018998 GO:0004521
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00199 K14648 ENDOU, PP11; poly(U)-specific endoribonuclease [EC:3.1.-.-] - csv:101208900 770.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00339 Cla-Chr5:3068037 Cla10g00199 Cla-Chr10:2309531 1.25E-18 dispersed
Cla08g00821 Cla-Chr8:20619804 Cla10g00199 Cla-Chr10:2309531 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g578 . Blo03g00133 Bda06g01303 . . Bpe07g00202 . . Cmo06g00853 . . . . . . . . Bhi11g00099 . . . Hepe06g1068 Mch10g1611 . Cla10g00199 Cam10g0205 Cec10g0210 Cco10g0211 Clacu10g0208 Cmu10g1051 Cre10g0459 Cone8ag0441 . . . Lsi07g01239 . . Cme06g02510 . . . . . . . Bma12g00197 . . . Cma06g00830 . . . . . . . . . . . . . . . . . . . . Csa03g00213 Chy06g02107 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002601 1 2 2 2 2 1 2 2 1 2 2 1 2 3 2 2 1 2 2 1 3 2 2 3 2 3 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00199 Cla_Chr10 FPKM 0.399508 0.681402 1.116914 0.878777 2.65984 2.161446 3.284425 0.405287 1.116998 1.144005