Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00229 ATGATGTACGAACAGAGTAATGGCTGTGAATCCGATTTTGTTCTTTTGGAAACCATACGGCGCCATTTGTTGGGAGAATCCGACGCTTACCGATGTGGGAATTTCGCCCTGGCCGGAACCGCCTCGCCGGTTTTCTGCCGGAGCTCTAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTAAAAGAGGATGATTCCGAGGACATGGTCATCGCCGGCGTCCTCCGTGATGCCGTCAGTGTTGGTTGGGTTCCGTCGCTCGGCGCTTCGCCGTCGGATGCCTTCAATTTTGGGTTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATATTGCCGGAAGTTAAGGTGGCGGCGGCGGCGGCGGCGACGCCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTCCGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCAGCAAAAAACGGAGCTCGGGTTTGGCTTGGAACGTTTGAGACGGCGGAGGATGCGGCACTTGCTTATGACCGCGCCGCTTACCGAATGCGTGGCTCGAAAGCTCTTCTCAATTTCCCACTTCGAGTTAATTCGGGCGAACCCGACCCGGTTAGAGTGACATCGAAACGGTCATCGCCTCGATCGTCGCCAGAGCCTACTTCATCTTTGTCGTCGGTAGAGAGTGGGTCCCCTAAGCGGAGGAAGAAGGCGGACGGCACGGCAGTGACACCCGCTCTAGCTTCGCCGGAGTTGATTCAATTGGTGGTGGGGACCAGTGAATTGCAAGTGGAAGTTGGCGTGGCAAAGTGA 840 57.74 MMYEQSNGCESDFVLLETIRRHLLGESDAYRCGNFALAGTASPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVIAGVLRDAVSVGWVPSLGASPSDAFNFGFSDVKPEPEILPPVNILPEVKVAAAAAATPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGTAVTPALASPELIQLVVGTSELQVEVGVAK 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2697300 2698139 - ClCG10G002440.1 Cla10g00229 281888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00229 279 MobiDBLite consensus disorder prediction 214 238 - -
Cla10g00229 279 CDD AP2 144 203 IPR001471 GO:0003700|GO:0006355
Cla10g00229 279 Gene3D AP2/ERF domain 144 206 IPR036955 GO:0003700|GO:0006355
Cla10g00229 279 SUPERFAMILY DNA-binding domain 145 205 IPR016177 GO:0003677
Cla10g00229 279 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700|GO:0006355
Cla10g00229 279 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700|GO:0006355
Cla10g00229 279 PANTHER DNA-BINDING DOMAIN 41 258 IPR044808 GO:0003700|GO:0009873
Cla10g00229 279 SMART rav1_2 145 209 IPR001471 GO:0003700|GO:0006355
Cla10g00229 279 MobiDBLite consensus disorder prediction 210 252 - -
Cla10g00229 279 Pfam AP2 domain 145 195 IPR001471 GO:0003700|GO:0006355
Cla10g00229 279 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700|GO:0006355
Cla10g00229 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 41 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02292 Cla-Chr1:36785133 Cla10g00229 Cla-Chr10:2697300 3.89E-34 dispersed
Cla05g00009 Cla-Chr5:144835 Cla10g00229 Cla-Chr10:2697300 2.04E-29 dispersed
Cla07g01621 Cla-Chr7:33565079 Cla10g00229 Cla-Chr10:2697300 1.79E-45 dispersed
Cla09g00719 Cla-Chr9:7061163 Cla10g00229 Cla-Chr10:2697300 3.14E-29 dispersed
Cla10g00229 Cla-Chr10:2697300 Cla10g00230 Cla-Chr10:2726599 1.14E-30 tandem
Cla01g00429 Cla-Chr1:4669402 Cla10g00229 Cla-Chr10:2697300 3.04E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61822 PF00847 AP2 1.20E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00229 K09286 - csv:101203663 436.032