Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00234 ATGGTTGGAAATCCAATCCATGGTAGCTTTTCAATCCCCAAAGCAAAATCTAGGGTTCGGTATTCGAAGTCGATCGTCATTCCTGTTGATCAATCGCAGCTTCCATCGACTTCTTCTTTTCCGGCTGCCGGGACGGTGGCGACTTCTGTGAGAATTTCGTTATCTGTATTTCTTCCGTCGAGATCTTCTCCGATTTTTCCATTACTGGGGTTTGGTTTAGGAATGAATTTCGATTTTAGGGGCTTTTTATTTAAGGCTATGTATATTGAGGAACTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGGAATTCAGGGGTTATTGTTAGTAATTTCGAGAGTCAGAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTACTTTTCTACCCGACTTTGCTTTACAATGTTTTTAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCTGATGTTCCCCGTTTGAAGGAGGTTGGCGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACTCTGGTTCCTTCAACTCTATATCGTGATCATGGAATTGATCATCTGACCATTCCGACAAGGGACTATTGCTTTGCACCTTTATTGAGTGACATTTGCATTGCTGTAAATTTCATCCACAAAAATGCATCACATGGACAGACTACATATGTTCACTGTAAAGCTGGACGAGGGCGTAGCACAACCATTGTTATTTGCTATCTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTATAAGCATGTGAAATCAATCAGGCCAAGGGTGCTTTTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTCTACCACCTGATTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGGAACTATCAGGATCATCGCATGATCTTATCGCATTTGATGATAGTTCTGTAGTTGTTGTAAAAGAATCCGATCTAGATGGATATGACCAAAGTATCAGCCAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTGGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCTTGTTTGTGGCTCAGCTATCGAGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATCTAGGCGTGGGGAAGGGCTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA 1260 43.65 MVGNPIHGSFSIPKAKSRVRYSKSIVIPVDQSQLPSTSSFPAAGTVATSVRISLSVFLPSRSSPIFPLLGFGLGMNFDFRGFLFKAMYIEELKEGELQSGEEGNSGVIVSNFESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPRLKEVGVRGVITLNEPYETLVPSTLYRDHGIDHLTIPTRDYCFAPLLSDICIAVNFIHKNASHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHLIVQKDVSFCHIDDLGKELSGSSHDLIAFDDSSVVVVKESDLDGYDQSISQSDMGDIWADLSVVCRVRVAGQAALTRISCLWLSYRAKHHSQKISGDDLGVGKGCSLSATHLEGFSVDIHVY 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2766327 2771239 - ClCG10G002490.2 Cla10g00234 281893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00234 419 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 87 419 - -
Cla10g00234 419 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 300 IPR029021 -
Cla10g00234 419 Pfam Dual specificity phosphatase, catalytic domain 194 296 IPR000340 GO:0008138|GO:0016311
Cla10g00234 419 PANTHER - 87 419 - -
Cla10g00234 419 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 222 290 IPR000387 GO:0016311|GO:0016791
Cla10g00234 419 CDD PTPMT1 154 296 IPR044596 GO:0004721
Cla10g00234 419 ProSitePatterns Tyrosine specific protein phosphatases active site. 243 253 IPR016130 GO:0016311|GO:0016791
Cla10g00234 419 Gene3D Protein tyrosine phosphatase superfamily 154 304 IPR029021 -
Cla10g00234 419 ProSiteProfiles Dual specificity protein phosphatase domain profile. 154 301 IPR020422 GO:0006470|GO:0008138
Cla10g00234 419 SMART dsp_5 157 298 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00234 Cla-Chr10:2766327 Cla11g00178 Cla-Chr11:2123554 1.17E-99 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00234 - - csv:101222975 636.336