Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g00236 | ATGATGGCTGGGAAAGATGATAATCTTGGATTAAGCCTTGGATTGAGCTTTGATTCTCATCATTTACAGCTCAATCTCATGCCTTCTTCTTGGAATAACGATGCTTCTTCAGATCGGACATCGGAAACAGGGCGATCGCTACTCCGAGGCATCGATGTGAACCGGATGCCGCCGTCGTCAACGGCGGATTGTGAAGAGGAGGCGGCGATGTCGAGTCCTAACAGTACGGTTTCGAGTGTGAGTGGGAAACGGAGTGAACGAGAGATGAACGGCGAAGATCTGGACGGAGATAGAGCTTGTTCTAGAGGAATTAGTGATGAAGAAGACGGAGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGAAAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTAGCGTTGGCGAAACAGTTAGGTCTAACGCCAAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAAGTAGATTGCGAGTTTCTAAAGAGATGTTGTGAGAATCTAACGGAGGAGAATAGGCGGTTGCAAAAGGAAGTACAAGAACTGAGAGCACTCAAACTTTCCCCACAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCATGTGAGCGAGTCGCGGTCCCACCCTCCACGTCAGCCCAACCTACGCATGTGACACGAATAGGCCAGGCCCAACCTCAGGCCCACCACGCTCGGCCCATCCACATCAACCCCTGGGCCTCCGCCATCCCCGCCCGGCCCTTCAACGCCCTACACCCTCGCTCGTAA | 837 | 51.02 | MMAGKDDNLGLSLGLSFDSHHLQLNLMPSSWNNDASSDRTSETGRSLLRGIDVNRMPPSSTADCEEEAAMSSPNSTVSSVSGKRSEREMNGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSAQPTHVTRIGQAQPQAHHARPIHINPWASAIPARPFNALHPRS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2788478 | 2790062 | - | ClCG10G002510.2 | Cla10g00236 | 281895 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g00236 | 278 | SMART | halz | 170 | 213 | IPR003106 | GO:0006355|GO:0043565 | |
Cla10g00236 | 278 | SUPERFAMILY | Homeodomain-like | 103 | 171 | IPR009057 | - | |
Cla10g00236 | 278 | Coils | Coil | 169 | 206 | - | - | |
Cla10g00236 | 278 | PANTHER | HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN | 6 | 269 | - | - | |
Cla10g00236 | 278 | MobiDBLite | consensus disorder prediction | 30 | 116 | - | - | |
Cla10g00236 | 278 | MobiDBLite | consensus disorder prediction | 65 | 84 | - | - | |
Cla10g00236 | 278 | CDD | homeodomain | 114 | 171 | IPR001356 | GO:0003677 | |
Cla10g00236 | 278 | Pfam | Homeodomain | 114 | 168 | IPR001356 | GO:0003677 | |
Cla10g00236 | 278 | Gene3D | - | 118 | 168 | - | - | |
Cla10g00236 | 278 | PRINTS | Lambda-repressor HTH signature | 141 | 150 | IPR000047 | GO:0003677 | |
Cla10g00236 | 278 | PRINTS | Lambda-repressor HTH signature | 150 | 166 | IPR000047 | GO:0003677 | |
Cla10g00236 | 278 | Pfam | Homeobox associated leucine zipper | 170 | 204 | IPR003106 | GO:0006355|GO:0043565 | |
Cla10g00236 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 110 | 170 | IPR001356 | GO:0003677 | |
Cla10g00236 | 278 | ProSitePatterns | 'Homeobox' domain signature. | 145 | 168 | IPR017970 | GO:0000981|GO:0006355 | |
Cla10g00236 | 278 | Pfam | HD-ZIP protein N terminus | 2 | 88 | IPR006712 | GO:0005634 | |
Cla10g00236 | 278 | MobiDBLite | consensus disorder prediction | 85 | 116 | - | - | |
Cla10g00236 | 278 | PANTHER | - | 6 | 269 | - | - | |
Cla10g00236 | 278 | MobiDBLite | consensus disorder prediction | 30 | 44 | - | - | |
Cla10g00236 | 278 | SMART | HOX_1 | 112 | 174 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00044 | Cla-Chr5:544855 | Cla10g00236 | Cla-Chr10:2788478 | 1.92E-107 | dispersed | |
Cla10g00236 | Cla-Chr10:2788478 | Cla10g01677 | Cla-Chr10:32506524 | 2.68E-63 | dispersed | |
Cla10g00236 | Cla-Chr10:2788478 | Cla09g00345 | Cla-Chr9:3389307 | 2.97E-66 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61824 | PF04618 | HD-ZIP_N | 1.00E-20 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g00236 | K09338 | - | csv:101223208 | 464.151 |