Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00236 ATGATGGCTGGGAAAGATGATAATCTTGGATTAAGCCTTGGATTGAGCTTTGATTCTCATCATTTACAGCTCAATCTCATGCCTTCTTCTTGGAATAACGATGCTTCTTCAGATCGGACATCGGAAACAGGGCGATCGCTACTCCGAGGCATCGATGTGAACCGGATGCCGCCGTCGTCAACGGCGGATTGTGAAGAGGAGGCGGCGATGTCGAGTCCTAACAGTACGGTTTCGAGTGTGAGTGGGAAACGGAGTGAACGAGAGATGAACGGCGAAGATCTGGACGGAGATAGAGCTTGTTCTAGAGGAATTAGTGATGAAGAAGACGGAGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGAAAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTAGCGTTGGCGAAACAGTTAGGTCTAACGCCAAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAAGTAGATTGCGAGTTTCTAAAGAGATGTTGTGAGAATCTAACGGAGGAGAATAGGCGGTTGCAAAAGGAAGTACAAGAACTGAGAGCACTCAAACTTTCCCCACAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCATGTGAGCGAGTCGCGGTCCCACCCTCCACGTCAGCCCAACCTACGCATGTGACACGAATAGGCCAGGCCCAACCTCAGGCCCACCACGCTCGGCCCATCCACATCAACCCCTGGGCCTCCGCCATCCCCGCCCGGCCCTTCAACGCCCTACACCCTCGCTCGTAA 837 51.02 MMAGKDDNLGLSLGLSFDSHHLQLNLMPSSWNNDASSDRTSETGRSLLRGIDVNRMPPSSTADCEEEAAMSSPNSTVSSVSGKRSEREMNGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSAQPTHVTRIGQAQPQAHHARPIHINPWASAIPARPFNALHPRS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2788478 2790062 - ClCG10G002510.2 Cla10g00236 281895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00236 278 SMART halz 170 213 IPR003106 GO:0006355|GO:0043565
Cla10g00236 278 SUPERFAMILY Homeodomain-like 103 171 IPR009057 -
Cla10g00236 278 Coils Coil 169 206 - -
Cla10g00236 278 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 6 269 - -
Cla10g00236 278 MobiDBLite consensus disorder prediction 30 116 - -
Cla10g00236 278 MobiDBLite consensus disorder prediction 65 84 - -
Cla10g00236 278 CDD homeodomain 114 171 IPR001356 GO:0003677
Cla10g00236 278 Pfam Homeodomain 114 168 IPR001356 GO:0003677
Cla10g00236 278 Gene3D - 118 168 - -
Cla10g00236 278 PRINTS Lambda-repressor HTH signature 141 150 IPR000047 GO:0003677
Cla10g00236 278 PRINTS Lambda-repressor HTH signature 150 166 IPR000047 GO:0003677
Cla10g00236 278 Pfam Homeobox associated leucine zipper 170 204 IPR003106 GO:0006355|GO:0043565
Cla10g00236 278 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Cla10g00236 278 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Cla10g00236 278 Pfam HD-ZIP protein N terminus 2 88 IPR006712 GO:0005634
Cla10g00236 278 MobiDBLite consensus disorder prediction 85 116 - -
Cla10g00236 278 PANTHER - 6 269 - -
Cla10g00236 278 MobiDBLite consensus disorder prediction 30 44 - -
Cla10g00236 278 SMART HOX_1 112 174 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00044 Cla-Chr5:544855 Cla10g00236 Cla-Chr10:2788478 1.92E-107 dispersed
Cla10g00236 Cla-Chr10:2788478 Cla10g01677 Cla-Chr10:32506524 2.68E-63 dispersed
Cla10g00236 Cla-Chr10:2788478 Cla09g00345 Cla-Chr9:3389307 2.97E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61824 PF04618 HD-ZIP_N 1.00E-20 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00236 K09338 - csv:101223208 464.151