Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00239 ATGGAAGATCCTCTTCACAGATTCCAGTTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCGCCACCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG 672 46.43 MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSDCFAYRGSLL 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2869126 2869797 + ClCG10G002540.1 Cla10g00239 281898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00239 223 MobiDBLite consensus disorder prediction 25 43 - -
Cla10g00239 223 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Cla10g00239 223 MobiDBLite consensus disorder prediction 8 24 - -
Cla10g00239 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 192 - -
Cla10g00239 223 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Cla10g00239 223 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Cla10g00239 223 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Cla10g00239 223 Pfam AP2 domain 43 94 IPR001471 GO:0003700|GO:0006355
Cla10g00239 223 MobiDBLite consensus disorder prediction 1 43 - -
Cla10g00239 223 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Cla10g00239 223 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Cla10g00239 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 14 192 - -
Cla10g00239 223 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00231 Cla-Chr6:2817759 Cla10g00239 Cla-Chr10:2869126 4.86E-41 dispersed
Cla10g00239 Cla-Chr10:2869126 Cla11g01484 Cla-Chr11:28476465 1.05E-42 dispersed
Cla10g00239 Cla-Chr10:2869126 Cla11g00204 Cla-Chr11:2372697 1.56E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61826 PF00847 AP2 4.90E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00239 - - csv:101222736 319.316