Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g00239 | ATGGAAGATCCTCTTCACAGATTCCAGTTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCGCCACCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG | 672 | 46.43 | MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSDCFAYRGSLL | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2869126 | 2869797 | + | ClCG10G002540.1 | Cla10g00239 | 281898 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g00239 | 223 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
Cla10g00239 | 223 | SUPERFAMILY | DNA-binding domain | 44 | 102 | IPR016177 | GO:0003677 | |
Cla10g00239 | 223 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - | |
Cla10g00239 | 223 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 14 | 192 | - | - | |
Cla10g00239 | 223 | ProSiteProfiles | AP2/ERF domain profile. | 44 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Cla10g00239 | 223 | PRINTS | Ethylene responsive element binding protein signature | 45 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Cla10g00239 | 223 | PRINTS | Ethylene responsive element binding protein signature | 67 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Cla10g00239 | 223 | Pfam | AP2 domain | 43 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Cla10g00239 | 223 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cla10g00239 | 223 | Gene3D | AP2/ERF domain | 44 | 102 | IPR036955 | GO:0003700|GO:0006355 | |
Cla10g00239 | 223 | SMART | rav1_2 | 44 | 107 | IPR001471 | GO:0003700|GO:0006355 | |
Cla10g00239 | 223 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 | 14 | 192 | - | - | |
Cla10g00239 | 223 | CDD | AP2 | 45 | 103 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g00231 | Cla-Chr6:2817759 | Cla10g00239 | Cla-Chr10:2869126 | 4.86E-41 | dispersed | |
Cla10g00239 | Cla-Chr10:2869126 | Cla11g01484 | Cla-Chr11:28476465 | 1.05E-42 | dispersed | |
Cla10g00239 | Cla-Chr10:2869126 | Cla11g00204 | Cla-Chr11:2372697 | 1.56E-48 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61826 | PF00847 | AP2 | 4.90E-13 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g00239 | - | - | csv:101222736 | 319.316 |