Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00259 ATGGCTTCTTCGATCGCTCTCCGAAGACTTGCCGCTTCCTCCGCCGTTAAGCTTTTCAGTCCTGTTCGCTCCGCCTCTGTTCTCCCCTCTGTCGGTCGTTCATTCAACACCAATGCTCAGATGACCAACTACGCCGATGACGACCGCTCCGTCGATGTTGACCGCGGCTCCGATCGCTCTATCTCTCGTTCTCGTGATCGCTTCCCTGGCTTCGCAGATGTGTTCGATCCGTTTTCTCCGACTAGGAGCTTAAGCCAGGTGCTGAATCTGATGGATCAGTTGATGGAGGATCCATTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGTTGGGATGTGAGAGAAGACGACAATGCTCTGTATCTACGTATGGATATGCCTGGACTGAGCAAAGAGGATGTGAAGGTGAGTGTGGAGCAGAACACACTGATCATCAAAGGGGAAGCAGCGAAAGAGTCCGAAGACGAGGAGGACCGGAGACGATTCTCGAGCCGACTAGATTTGCCTGCGAACCTGTACGAACTGAATTCGATCAAAGCAGAGATGAAAAATGGGGTTCTGAAAGTGGCGGTGCCAAAGGTGAAGGAAGAAGAGAGGAAGGATGTGAGGCATGTTACTGTTGAGTAG 636 52.2 MASSIALRRLAASSAVKLFSPVRSASVLPSVGRSFNTNAQMTNYADDDRSVDVDRGSDRSISRSRDRFPGFADVFDPFSPTRSLSQVLNLMDQLMEDPFLAASRGVGAGSRRGWDVREDDNALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKVAVPKVKEEERKDVRHVTVE 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3177473 3178966 + ClCG10G002740.1 Cla10g00259 281918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00259 211 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 211 IPR044656 -
Cla10g00259 211 SUPERFAMILY HSP20-like chaperones 81 204 IPR008978 -
Cla10g00259 211 Gene3D - 71 210 IPR008978 -
Cla10g00259 211 CDD ACD_sHsps-like 115 196 - -
Cla10g00259 211 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 105 211 IPR002068 -
Cla10g00259 211 PANTHER HEAT SHOCK 22 KDA PROTEIN, MITOCHONDRIAL-LIKE 1 211 - -
Cla10g00259 211 Pfam Hsp20/alpha crystallin family 115 210 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00259 K13993 HSP20; HSP20 family protein - csv:101219106 316.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00548 Cla-Chr4:19043582 Cla10g00259 Cla-Chr10:3177473 1.81E-149 dispersed
Cla05g02629 Cla-Chr5:37478900 Cla10g00259 Cla-Chr10:3177473 4.38E-23 dispersed
Cla10g00259 Cla-Chr10:3177473 Cla07g00351 Cla-Chr7:4240248 3.03E-14 dispersed
Cla10g00259 Cla-Chr10:3177473 Cla07g00347 Cla-Chr7:4222801 2.87E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g532 Blo02g01045 Blo03g00162 . . Bpe05g00583 . . . . . . . . . . Cpe14g00946 . Bhi11g00197 . . . . . . Cla10g00259 Cam10g0265 Cec10g0273 Cco10g0271 Clacu10g0267 Cmu10g1110 Cre10g0518 Cone8ag0395 Cone12ag0380 . . . . . Cme06g02575 . . . . . . . Bma12g00642 . . . . Cma16g01142 . Car16g01081 . . . . . . . . . . . . . . . . . Csa03g00278 Chy06g02044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00259 Cla_Chr10 FPKM 18.86392 18.715918 1.81086 3.620762 14.178746 12.926015 12.537784 1.876272 1.909863 1.256001