Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00261 ATGAGGGGTATTTCCTTTCACTTTCAGGGGAAGGGGGAGTTGGAATTTTCAGCCGCTTTTTCTTCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGGGAAGAACAACAAGAACAAGAACAAGAACTAGAAGAAGAACAAGAAGAAGGGCTTTCTTATTTTGTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCTACTCTCTCTTCTTCCTTTGGTGGCGGTGGCGGTGGCGGTGGTTGTGTTCCTTCACTTCCTCCGGAGACTCCTGCTGTTGAACCGGTCGCCGGAACTGGTGTTGGGAACGCCATTTTCCCAGGTGGATTGGAGCGATGTGGGGTTGGATTGGAAGATTTGGAGAGTATGTGGTCGGAAACAGCCGGCCCAGAACAGTCGTTTCTCCGATGGATCGCCGGAGATGTTGTTGAAGATCCCAGTCTAGGGAGTAAAAGTGTTTTGCACAATGGGAATATACCCTTTGATTTGGATGGCAATGCCGGTATCGGAATGGTCGATCAGGGTTCCGAATTCGACACCGGTGCTGGTAATGTTCTCGCCAACATTAATCCTAATTTATCGTTTCCTCTTGCTGCTTGTGCTGGGTTTTCTGATGTTAATGTTAACAATAAGTCTCTTAGTAGAAGCACTTGTGGGGGGGTTGTTAATTACAAGAGTTCTAGTTTGGGTTTGAACAATCGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTACTGGTTCTCTTGAAAATCTTCTTGTTCCTGTTTCTGGGATGATTTATCCTCAGCAACTTCAGCCATTTGAGAGTCCTGATGAGAAACCTCAGAATTTGAATACTCACGTTTTGTTGAACCAACATCAGCAGCCTCAGAACCCTAGTTTTTTTGTGCCATTGACGTTTGGTCAACAGGAACAGCAGCTCCAGCCTCAACTGAAGAGGCACAATTCGAGTGGAGGACTCGACCCCAACCCAAACGGGCAGATCCCGAAGGTTCCGTTTATGGATCCAGGGAATGAGATTTTTCTGAGGAATCATCAGTTGCAAGTGTTGCAACAGCAGCAGCAGCAGCAGCTTGGTTATCCACCGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTCGCCAAAGCCGAAAGTTGTAGGGCTTGGCGACGAAATGGCGTATCACAATCCCCCACAGCAACAGCATCAGCAACATGCTTTGCTCGACCAGCTCTACAAGGCAGCAGAGCTGGTAGGGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTTTGAACAACCCAGTTAATCCTCCTCCACCTCGCTGCCCGACACCATTTGATGTGATCTTCAAGATGGGTGCTTACAAGGTGTTTTCCGAAATCTCCCCACTCATTCAGTTTGTGAATTTCACCTGCAACCAGGCACTGCTCGAGGCCCTCGATGACGTTGATCGAATTCACATTGTAGATTTCGATATTGGTTTTGGAGCTCAGTGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCGGGGTGCACTGTCACTCAAAATCACTGCTTTTGCCTCTCCCTCCACTCACCATCCAATTGAACTCGGGCTTATGCGTGAAAATCTTACTCAATTTGCTAATGACATTGGAATAAGTTTTGAGTTCGAAGTGGTTAACTTTGATTCTTTGAACCAGAACTCCTTTCCATTGCCATTTCCTCGAGCAAGCGAAAATGAGGCTATTGCAGTAAACTTCCCTTTATGGTGCTCATCAAATCAGCCAGCGATGCTTCCGTCTCTCCTCCGTTTCATCAAGCAACTCTCACCGAAAATTGTGGTCTCACTGGACCGAGGGTGCGATCGAAGTGACCTTCCATTTCCTCAGCATATGCTTCAGGCCCTTCAGTCCTATATTAACCTCCTGGAATCTCTGGATGCTATCAATATGAATTCGGATGCCGTGAACAAGATTGAGAGGTTTCTTTTGCAACCCAGAATTGAAAGCACCGTCCTGGGACGGCTTCGAGCACCTGAAAGAATGCCCCTTTGGAAGACACTCTTTGCCTCTGCTGGGTTTACGCCTGTAACCTTTAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTCGAGAAACGCCAGGCTTCCCTAGTTTTATGCTGGCAGCGCCGGGAGCTCATATCTGCTTCAGCTTGGAGGTGTTGA 2343 47.55 MRGISFHFQGKGELEFSAAFSSSSPICSGFAEKWVKKGEEQQEQEQELEEEQEEGLSYFVLPNNEPTSVLHMRSPSPPTSASTLSSSFGGGGGGGGCVPSLPPETPAVEPVAGTGVGNAIFPGGLERCGVGLEDLESMWSETAGPEQSFLRWIAGDVVEDPSLGSKSVLHNGNIPFDLDGNAGIGMVDQGSEFDTGAGNVLANINPNLSFPLAACAGFSDVNVNNKSLSRSTCGGVVNYKSSSLGLNNRHGNFNVQNPIFTGSLENLLVPVSGMIYPQQLQPFESPDEKPQNLNTHVLLNQHQQPQNPSFFVPLTFGQQEQQLQPQLKRHNSSGGLDPNPNGQIPKVPFMDPGNEIFLRNHQLQVLQQQQQQQLGYPPGLQFLPQQKAMSPKPKVVGLGDEMAYHNPPQQQHQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLLNNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRNRGALSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVVNFDSLNQNSFPLPFPRASENEAIAVNFPLWCSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPLWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3189905 3192247 - ClCG10G002760.1 Cla10g00261 281920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00261 780 Coils Coil 31 51 - -
Cla10g00261 780 Pfam GRAS domain family 418 779 IPR005202 -
Cla10g00261 780 PANTHER SCARECROW-LIKE PROTEIN 6 42 779 - -
Cla10g00261 780 MobiDBLite consensus disorder prediction 70 99 - -
Cla10g00261 780 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 42 779 IPR005202 -
Cla10g00261 780 ProSiteProfiles GRAS family profile. 408 779 IPR005202 -
Cla10g00261 780 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00286 Cla-Chr6:3679742 Cla10g00261 Cla-Chr10:3189905 1.14E-162 dispersed
Cla07g00852 Cla-Chr7:23787507 Cla10g00261 Cla-Chr10:3189905 3.63E-66 dispersed
Cla07g00854 Cla-Chr7:23847324 Cla10g00261 Cla-Chr10:3189905 2.17E-65 dispersed
Cla10g00261 Cla-Chr10:3189905 Cla11g00724 Cla-Chr11:10282118 1.61E-42 dispersed
Cla10g00261 Cla-Chr10:3189905 Cla07g00872 Cla-Chr7:24281159 8.95E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61828 PF03514 GRAS 4.30E-93 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00261 - - bhj:120090454 1363.98