Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00268 ATGATGGGTTCTAAAGCTTCAGCCATGTTCTTCATCTTTTCAATCTTCATGGCCTTATCTTTGCCTCCAATTTATGCTTGTACTCCTTGCACTCAGCCCCACCCTCAGCCCCCTTATCACCGCCCTTCCCACCCTAAAATTCCCCATCCAAAACCTCACCCTCCACCCCACCACGGCGGTGGAGGAGGAGGAGGAGGCGGCGGAGGCAGTGGTAGTCGTGGAGGTGGTGGAGGAGGCGGCGGTGGTGGTGGTAGCCGTGGAGGTGGTGGAGGTGGAGGCGGTGGCGGAGGTGGAGGGCATCCCCACCCACCAATTGTTATTCCACCCCCAGTTATTTCTCCTCCCGTGATAACCCCTTCACCACCATCCACAACCTACCCTCCTTATACTAGCCCTCCTCCGAGCGGGGGTGGGGGTGGTGGTGGTGGTGGAGGTGGCGGACCAGGGTCGGGGCAATACCCTCCGCCGTCAACACCGGTTCAACCAACATGTCCAATAGATGCATTGAAATTAGGGTTATGTGTGGATGTTCTTGGAGGGTTGGTGCATATTGGTTTAGGGAATCCAGTTGAAAATGCATGCTGTCCAGTGCTTGGAGGGCTGTTGGAACTTGAAGCAGCAATATGTTTGTGCACAACTTTGAGGATTAAGCTTTTGAATCTCAATATATTCATTCCTTTGGCACTACAAGCTCTTATTACCTGTGGCAAGAATCCTCCTCCTGGCTTTGTTTGTCCTCCACTTTAA 747 53.28 MMGSKASAMFFIFSIFMALSLPPIYACTPCTQPHPQPPYHRPSHPKIPHPKPHPPPHHGGGGGGGGGGGSGSRGGGGGGGGGGGSRGGGGGGGGGGGGGHPHPPIVIPPPVISPPVITPSPPSTTYPPYTSPPPSGGGGGGGGGGGGPGSGQYPPPSTPVQPTCPIDALKLGLCVDVLGGLVHIGLGNPVENACCPVLGGLLELEAAICLCTTLRIKLLNLNIFIPLALQALITCGKNPPPGFVCPPL 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3399887 3401181 + ClCG10G002840.2 Cla10g00268 281927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00268 248 Pfam Hydrophobic seed protein 163 246 IPR027923 -
Cla10g00268 248 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 166 247 IPR036312 -
Cla10g00268 248 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 2 247 - -
Cla10g00268 248 Gene3D - 162 247 IPR036312 -
Cla10g00268 248 MobiDBLite consensus disorder prediction 102 134 - -
Cla10g00268 248 MobiDBLite consensus disorder prediction 33 161 - -
Cla10g00268 248 PANTHER - 2 247 - -
Cla10g00268 248 CDD HPS_like 162 245 IPR027923 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00268 - - - cmo:103490902 199.904
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00268 Cla-Chr10:3399887 Cla01g00389 Cla-Chr1:4306499 2.91E-17 dispersed
Cla10g00267 Cla-Chr10:3379451 Cla10g00268 Cla-Chr10:3399887 9.21E-25 tandem
Cla06g01143 Cla-Chr6:24438026 Cla10g00268 Cla-Chr10:3399887 7.12E-40 transposed
Cla11g01658 Cla-Chr11:30219878 Cla10g00268 Cla-Chr10:3399887 4.00E-27 transposed
Cla01g00381 Cla-Chr1:4265780 Cla10g00268 Cla-Chr10:3399887 1.55E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g517 . . Bda06g00034 . . Bpe07g00169 . . Cmo06g00794 . . . . . . . . . . . . . . . Cla10g00268 Cam10g0276 Cec10g0286 Cco10g0280 Clacu10g0278 Cmu10g1118 Cre10g0527 Cone2ag0209 Cone16ag0834 Cone4ag0656 Cone7ag0615 Lsi07g01313 . . Cme06g02586 . . . . . . . Bma12g00636 . . . Cma06g00772 . Car06g00689 . Cpe08g00747 . . . . . . . . . . . . . . . . Csa03g00287 Chy06g02036 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000904 5 2 1 6 4 2 3 2 2 2 3 2 4 2 2 4 2 5 3 2 3 2 3 3 3 3 3 5 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00268 Cla_Chr10 FPKM 0.135261 0.222813 0.010033 0.006182 0.063512 0.027408 0.025609 0.003227 0.011214 0.002887