Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00282 ATGCCCAAAATCAGTAGCCAACCACACTCAACGAATCATGAACCATCCATTTCCTTTTTCATTCGGAAAATTTTGCTCTACAAACAACGAAGGGATCAGATGTTAGCTCCTCCGAGTTTCCTCCCCTCACCCCAACTATCCACCATGCAACACTCCCCCAATTCCCAATCCCAACCCCCAACTTCCCGCCGCGTCGCAGTGATCGGCGCCGGTGCCGGCGGCCTCGTCACTGCCCGTGAGCTCCGCCGCGAGGGCCACCGTGTAGTCGTTTTTGAACGGAATAATCAAATTGGAGGGACCTGGGTATATTCCCCGGAAATTGAATCCGACCCACTTGGAATCGACCCAAATCGGACCCGTGTCCATAGCAGTCTCTACAAATCTCTACGAACCAATCTCCCCAGAGAACTGATGGGGGTCCGTGATTATCCGTTTGTGCCTCGAGAAGGGAAGGATCGGGATCCGAGGCGATTTCCTAGTCACCGAGAGGTTTTAAAGTATTTGGAAGATTTCGCGAATGAATTTGGGATTTGTGAATTGGTGAGGTTTGGAACTGAGGTTGTTTTTGTTGGTTTGGAGGAGCTTGAGAAATGGAGGGTTGAATTTAGATGTGAAAATGGTGCTGTTGATGATGAAATTTTTGATGCTGTAGTTGTTAGTGTTGGGAATTATTCGCAGCCTCGAGTGGCAGAGATTCCTGGGATTGATGGATGGCCTGGGGAGCAAATACATAGTCACAATTATCGTGATCCCGAACCATTTCGGGGTAAGGTTGTTGTCTTGATAGGTTATTCGTCAAGTGGTACAGACATTTCTCAGGAGCTCACTGGGGTTGCCAAAGAAATACATATTGCTTGGAGATCAGCTAAAACAGAGCTTTTCGACACAGAATCAACTATTTGTAACGTGTCATTTCATCCAATGATCGAAAGTGTCTGTAAAGATGGGACAGTGGTCTTTCAAGATGGTTGTGTCATTTCGGCTGATGTTATTTTGCATTGCACTGGGTACAAATATCATTTCCCTTTTCTTGAAACCAATGGCATTGTTACGGTGGACGACAACCGTGTAGGACCTCTGTACAAGCATGTCTTCCCCCCAGCATTGGCCCCAGGGCTTTCCTTTGTTGTTCCTTTTCCCATGTTTGAGCTTCAAAGCAATTGGGTTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCGAAAGAGGAAATGCTGGCAGATGTTAAAGACTTTTATGCAGATCTCGAAGCTTTTGGCAAGCCCAAGCATCGGACCCATGAATTAGGTGATTATATGCCTGCCTACTTAGATTGGCTTGCAGCAACATGTGGTTGTCCTGCATATGAAGAATGGAGAAAGGAAATGTACATTGCTACTCATATTTATAAAAAGGCCAATCTCGAGACGTATCGCGATGATTGGCACGACGATGAGTTGATTCGCCAAGCTTACAAGGAATTTAGCAAGTATACTACAAATGAAAGAAGGATTGATGGATGGCCTGGGGAGCAAGTGCATAGTCACAATTATCGTGATCCCGAACCATTTCGGGGTAAGGTTGTTGTCGTGATAGGTTATTCTGCAAGCGGTACGGACATTTCTCAGGAGCTCATTGGGATTGCCAAAGAAATTCATATTGCTTGGAGATCAGCTAAAACAAAGCTTTTGGACACAGAACCAATTATTAGTAATGTGTCATTTCATCCAAATATCGAAAGTGTCCGTAAAGATGGGACAGTGGTTTTTCAAGACGGGTGCATCATTTTGGCTGATGTTATTCTGCATTGCACTGGGTACAAATATCATTTCCCTTTTCTTGAAACCAATGGGATTGTTACGGTGGAGGACAACCGTATAGGACCTCTGTACAAGCATGTCTTCCCCCCAGCATTAGCCCCAGGGCTTTCCTTTGCTGTTCCTTTTCCCATGTTTGAGCTTCAAAGCAATTGGGTTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCGAAAGAGGAAATGCTGGCAGATGTTAAAGCCTTTTATGCAGATCTCGAAGCTTTTGGCAAGCCCAAGCATCGGACCCATGAATTGGGTAGTGATAATATGCCTGCCTACTGTAACTGGCTTGCAACAACTTGTGGTTGTCCTGCCTATGAAGAATGGAGAAAGGAAATGTTCAATGCTACTGATATAAATAGAAGGGCCAATCTCGGGTCATATCGTGATGATTGGCATGACGATGACTTGATTCATCAAGCTTATGAGGAATTTAGCAACCAATTAGGAACTCAACCCAACGACAATGCGACACTCCAGAAGCGTGGCAGTGATCGGCGCCGGTGCCGGTGGCCTCGTCTCGGCCCGGGAACTTTCCCGCGAGGGCCACCACGTGGTCGTATTCGAACTGAATACTCAAATTGGAGGGACCGGAAATTGAATCCGACCCACTTGGAATCGACCCGAATCCATAGCAGCCTCTTCAATTCTCTACGCACCAATATTCCAAGAGAACTCATGGGGGTCCGCGATTACCCGTTTGTTCCTCGAGAAGGGGAGGATCGAGATCAGAGGCGATTTCCAAGTCATCGAGAGGTCTTAAAGTATTTGGAAGATTTCGCAAATGAATTTGGGATTTGTAAATTGGTGAGGTTTGGAACTGAAGTTGTGTTTGTTGGTTTGGAGGAGGAGCTTGGGAAATGGAGGGTTGAATTTAGATTTGAAAATGGGGTTGTTGATTATGACATTTTTGATGCTGTGGTTGTTTGTGTTGGGAATTATTCGCAGCCTCGAGTTGCAGAGATTCATGGGATTGATGGATGGCCTGGGGAGCAACTACATAGTCACAATTATCGTGATCCCGAACCGTTTCGGGGTAAGGTTGTTGTGTTGATAGGCTATTCTTCAAGTGGTACGGACATTTCTCAAGAGCTCATTGAGGTTGCCAAAGAAATTCATATTGCTCGGAAATCAGCTAGAACAACAAAGCTTTTGGACACAGAATCAATTATTAATAATGTGTCATTTCATCCAATGGTCGAAAGTGTCCGTAAAGATGGGACGGTGGTCTTTCAAGACGGGTGCGTCGTTTCGGCTGATATTATTCTGCATTGCACTGGGTACAAATATCATTTCCCTTTTCTTGAAACCAACGGCATCGTTACGGTGGACGATAATCGTGTAGGACCACTGTATAAGCATGTCTTCCCCCCAGCATTGGCCCCAGGGCTTTCCTTTATTGGGTTACCATTTAAGGCAAGTATCCAAAATTGTGGTACGAACTTTGAATTTGGTTTATGGTTACAACAAATTCTTGTGCTACAATTTGTAATGCAGGTTGTTTCTTTTCCCATGTTTGAGCTTCAAAGCAATTGGGTTGCTGGTGTTTTATCGAACAGGATTGCACTTCCATCGAAAGAGGAAATGTTGGCAGATCCTGCCTACTGTAACTGGCTTGCAGCAACTTGTGGTCGTCCTGCCTATGAAGAATGGAGAAAGGAAATGTTCATTGCTACTAATATTAATAAAAGGGCCAATCTCGGGTCTTACCGTGATGATTGGCACGACGATGAGTTGATTCGTCAAGCTTATGAGGAATTTAACAAGTACACTACAAATGAAAGAAGTCAAAACCACACTCTAATTTGA 3630 44.79 MPKISSQPHSTNHEPSISFFIRKILLYKQRRDQMLAPPSFLPSPQLSTMQHSPNSQSQPPTSRRVAVIGAGAGGLVTARELRREGHRVVVFERNNQIGGTWVYSPEIESDPLGIDPNRTRVHSSLYKSLRTNLPRELMGVRDYPFVPREGKDRDPRRFPSHREVLKYLEDFANEFGICELVRFGTEVVFVGLEELEKWRVEFRCENGAVDDEIFDAVVVSVGNYSQPRVAEIPGIDGWPGEQIHSHNYRDPEPFRGKVVVLIGYSSSGTDISQELTGVAKEIHIAWRSAKTELFDTESTICNVSFHPMIESVCKDGTVVFQDGCVISADVILHCTGYKYHFPFLETNGIVTVDDNRVGPLYKHVFPPALAPGLSFVVPFPMFELQSNWVAGVLSNRIALPSKEEMLADVKDFYADLEAFGKPKHRTHELGDYMPAYLDWLAATCGCPAYEEWRKEMYIATHIYKKANLETYRDDWHDDELIRQAYKEFSKYTTNERRIDGWPGEQVHSHNYRDPEPFRGKVVVVIGYSASGTDISQELIGIAKEIHIAWRSAKTKLLDTEPIISNVSFHPNIESVRKDGTVVFQDGCIILADVILHCTGYKYHFPFLETNGIVTVEDNRIGPLYKHVFPPALAPGLSFAVPFPMFELQSNWVAGVLSNRIALPSKEEMLADVKAFYADLEAFGKPKHRTHELGSDNMPAYCNWLATTCGCPAYEEWRKEMFNATDINRRANLGSYRDDWHDDDLIHQAYEEFSNQLGTQPNDNATLQKRGSDRRRCRWPRLGPGTFPRGPPRGRIRTEYSNWRDRKLNPTHLESTRIHSSLFNSLRTNIPRELMGVRDYPFVPREGEDRDQRRFPSHREVLKYLEDFANEFGICKLVRFGTEVVFVGLEEELGKWRVEFRFENGVVDYDIFDAVVVCVGNYSQPRVAEIHGIDGWPGEQLHSHNYRDPEPFRGKVVVLIGYSSSGTDISQELIEVAKEIHIARKSARTTKLLDTESIINNVSFHPMVESVRKDGTVVFQDGCVVSADIILHCTGYKYHFPFLETNGIVTVDDNRVGPLYKHVFPPALAPGLSFIGLPFKASIQNCGTNFEFGLWLQQILVLQFVMQVVSFPMFELQSNWVAGVLSNRIALPSKEEMLADPAYCNWLAATCGRPAYEEWRKEMFIATNINKRANLGSYRDDWHDDELIRQAYEEFNKYTTNERSQNHTLI 1209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3712294 3731458 + ClCG10G002970.1 Cla10g00282 281941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00282 1209 PRINTS Flavin-containing monooxygenase (FMO) signature 63 79 IPR000960 GO:0050660|GO:0050661
Cla10g00282 1209 PRINTS Flavin-containing monooxygenase (FMO) signature 321 348 IPR000960 GO:0050660|GO:0050661
Cla10g00282 1209 PRINTS Flavin-containing monooxygenase (FMO) signature 243 257 IPR000960 GO:0050660|GO:0050661
Cla10g00282 1209 PRINTS Flavin-containing monooxygenase (FMO) signature 270 285 IPR000960 GO:0050660|GO:0050661
Cla10g00282 1209 PRINTS Flavin-containing monooxygenase (FMO) signature 87 111 IPR000960 GO:0050660|GO:0050661
Cla10g00282 1209 Gene3D - 931 1032 IPR036188 -
Cla10g00282 1209 PANTHER DIMETHYLANILINE MONOOXYGENASE 498 754 - -
Cla10g00282 1209 PANTHER DIMETHYLANILINE MONOOXYGENASE 1140 1198 - -
Cla10g00282 1209 PANTHER DIMETHYLANILINE MONOOXYGENASE 58 492 - -
Cla10g00282 1209 PANTHER DIMETHYLANILINE MONOOXYGENASE 816 1080 - -
Cla10g00282 1209 Gene3D - 64 475 IPR036188 -
Cla10g00282 1209 SUPERFAMILY FAD/NAD(P)-binding domain 497 597 IPR036188 -
Cla10g00282 1209 Gene3D - 492 580 IPR036188 -
Cla10g00282 1209 MobiDBLite consensus disorder prediction 755 793 - -
Cla10g00282 1209 SUPERFAMILY FAD/NAD(P)-binding domain 1002 1181 IPR036188 -
Cla10g00282 1209 Pfam Flavin-binding monooxygenase-like 562 675 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla10g00282 1209 Pfam Flavin-binding monooxygenase-like 997 1138 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla10g00282 1209 Pfam Flavin-binding monooxygenase-like 63 288 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla10g00282 1209 Pfam Flavin-binding monooxygenase-like 499 551 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla10g00282 1209 Pfam Flavin-binding monooxygenase-like 818 984 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla10g00282 1209 Pfam Flavin-binding monooxygenase-like 303 445 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla10g00282 1209 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 498 754 - -
Cla10g00282 1209 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 1140 1198 - -
Cla10g00282 1209 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 58 492 - -
Cla10g00282 1209 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 816 1080 - -
Cla10g00282 1209 SUPERFAMILY FAD/NAD(P)-binding domain 309 479 IPR036188 -
Cla10g00282 1209 SUPERFAMILY FAD/NAD(P)-binding domain 816 981 IPR036188 -
Cla10g00282 1209 Gene3D - 1095 1202 IPR036188 -
Cla10g00282 1209 Gene3D - 799 930 IPR036188 -
Cla10g00282 1209 Gene3D - 582 761 IPR036188 -
Cla10g00282 1209 SUPERFAMILY FAD/NAD(P)-binding domain 59 288 IPR036188 -
Cla10g00282 1209 MobiDBLite consensus disorder prediction 36 63 - -
Cla10g00282 1209 Gene3D - 231 334 IPR036188 -
Cla10g00282 1209 MobiDBLite consensus disorder prediction 40 63 - -
Cla10g00282 1209 PANTHER DIMETHYLANILINE MONOOXYGENASE 1104 1139 - -
Cla10g00282 1209 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 1104 1139 - -
Cla10g00282 1209 SUPERFAMILY FAD/NAD(P)-binding domain 571 741 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00282 - - - csv:116401639 799.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01176 Cla-Chr4:26955935 Cla10g00282 Cla-Chr10:3712294 4.68E-71 dispersed
Cla08g00973 Cla-Chr8:22378804 Cla10g00282 Cla-Chr10:3712294 4.17E-09 dispersed
Cla10g00282 Cla-Chr10:3712294 Cla06g00846 Cla-Chr6:12570165 2.99E-08 dispersed
Cla10g00282 Cla-Chr10:3712294 Cla07g00144 Cla-Chr7:1663278 2.79E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g506 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00282 Cam10g0292 Cec10g0300 Cco10g0296 Clacu10g0292 Cmu10g1131 Cre10g0539 . . . . Lsi07g01322 . . Cme06g02606 . . . . . . . . . . . . . . . Cpe08g00751 . . . . . . . . . . . . . . . . Csa03g00301 Chy06g02023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00282 Cla_Chr10 FPKM 0.463652 1.471199 1.832552 1.999791 2.058347 2.002114 1.90915 1.305231 0.594541 0.534161