Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00287 ATGGCTCTTGTTATAAGACCCCAATTTTCAAAATCCTCCAAAATCAAATCAATCATGAGACGAACAAGAGGCTTCAAAGTGAAAATCAAGCTTCTCAAGATCTTCAAATGGAGAACCCACTTCAATCTTCCAACTCATTCCAATCCCTTCTCCAAGCTCTTTGCCCTTGCAACAGCGTCGTTTTCTTACCGGCCTGGGTATGCCCGCCTCGATCGGGTTCGGTCTAGGCCTGCAGCGGCGGCGCCCAAGGGTTATTTGGCTGTGCACGTCGGCGGACCGGAGGATGAAACGGAGAGACATCTTGTGCCCGTGATTTACTTCAACCATCCATTGTTCCGGAAATTGCTGCAGGCGGCGGAGAGGATTTATGGGTTTGATTATCCGGGTCGGATTGTCATTCCGGTTGACGTGTCGGAGTTTGAGGAGGTTAAAAATTGTATCGCCGCCGCGGAGTACGGCCGTCGCTGTTGGCATAATGGTGGCTACCGACGCCGGCGTTGCGAAAATATTTTCCCCTCCAAGAGGACCACTTCAATCTCAGTTGAAACCACAAAGGAGGAACACCCAAAACTCCACGTTGTAACCTTGAATCAAAAACATCAAATTGTACCTTTCTTAAAGAATCCAACAGAACCTGAGCAGGCACAGCCTGCAGAAGCACAGGCAGAGCCTCCCTCGGAACTGTCCCGGCCAAGTCACGAGCTTTTTGCAAATGAGCATTGGCTACAGAAGCCATCTCAAAAACTGCATCACATAGTCTCTCCCTCGAATCCAAGTAGTAGTGTTGATGCAGTATCTTCAGCATATTTCTCTAGTTCATCAATGGTTCCTGGAATGTCGGTGTCCTCCCTTCTGGCATCGTTAATTCGAGCTTCGACAGACCTTTTAAGCCACAGTTTGCTAATTTTGTTCTCCGATATCACAGATGAAAGGGCTTGCGCTATTGGATGTTCAATCTTTTTACTAGCATATATTTTGTCAATAGCTTCCTGCCACCATACAAGTCGCATAAGACCTATCCTGGGATCGGTAGCAACGTCCATGGCTCTCGATGTTTCAACATTAAATGCTCTAAGTGTGAATGCAGCCTTTCGCATTGCAGGGGGAAGTTCGAGGAGGCAGAGATCTACTATCAATTCACAAACTGGAAAACAAAACAAGTTAACACCACCATCGGCATCAATTAACAAGTTCTATACAGCAATGAAGTTTTGTGAATTCAAGAAATGCCAACAAAGAGAGATATATATATGGCACACAAAGACCATGGGCGTACAAAACCCTCGAAGAGCTCCGAGGGGAGGCGCATTGGCCAGGTTCCTGGCTAGGAGAAAGCATTAA 1341 46.83 MALVIRPQFSKSSKIKSIMRRTRGFKVKIKLLKIFKWRTHFNLPTHSNPFSKLFALATASFSYRPGYARLDRVRSRPAAAAPKGYLAVHVGGPEDETERHLVPVIYFNHPLFRKLLQAAERIYGFDYPGRIVIPVDVSEFEEVKNCIAAAEYGRRCWHNGGYRRRRCENIFPSKRTTSISVETTKEEHPKLHVVTLNQKHQIVPFLKNPTEPEQAQPAEAQAEPPSELSRPSHELFANEHWLQKPSQKLHHIVSPSNPSSSVDAVSSAYFSSSSMVPGMSVSSLLASLIRASTDLLSHSLLILFSDITDERACAIGCSIFLLAYILSIASCHHTSRIRPILGSVATSMALDVSTLNALSVNAAFRIAGGSSRRQRSTINSQTGKQNKLTPPSASINKFYTAMKFCEFKKCQQREIYIWHTKTMGVQNPRRAPRGGALARFLARRKH 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3787997 3795817 + ClCG10G003020.2 Cla10g00287 281946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00287 446 PANTHER AUXIN-RESPONSIVE PROTEIN-LIKE 61 158 - -
Cla10g00287 446 MobiDBLite consensus disorder prediction 211 230 - -
Cla10g00287 446 Pfam Auxin responsive protein 74 146 IPR003676 GO:0009733
Cla10g00287 446 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 61 158 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00287 K14488 SAUR; SAUR family protein - csv:101210462 222.631
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00247 Cla-Chr6:3070501 Cla10g00287 Cla-Chr10:3787997 1.25E-16 dispersed
Cla06g00304 Cla-Chr6:3920375 Cla10g00287 Cla-Chr10:3787997 7.58E-16 dispersed
Cla10g00287 Cla-Chr10:3787997 Cla05g02636 Cla-Chr5:37570802 1.14E-12 dispersed
Cla10g00287 Cla-Chr10:3787997 Cla05g00058 Cla-Chr5:643115 2.50E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g490 . . . Bda08g00563 Bpe05g00593 . . . . . . . . . . . . . . . . . . . Cla10g00287 Cam10g0298 Cec10g0306 Cco10g0301 Clacu10g0297 Cmu10g1136 Cre10g0544 . . Cone11ag0591 Cone18ag0916 . . . . . . Bda07g00013 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011053 2 0 0 3 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 0 1 0 1 1 0 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00287 Cla_Chr10 FPKM 1.703797 1.556303 1.020078 0.799345 2.788009 2.249541 2.118903 2.827203 2.977315 2.890709