Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00294 ATGGGGCGTATTTCGGCTTCAGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTACTCAAGATGTTGAGGAAAACATCTGCAAATTTGCGAAGAAGGGTTTGACTCCGTCTCAGATCGGTGTCATTCTTCGTGATTCTCATGGTATTGCTCAGGTTAAGAGCGTTACTGGCAACAAGATCTTGCGCATTCTTAAGGCTCATGGGCTTGCTCCGGAGATTCCCGAGGATCTTTACCATTTGATTAAGAAGGCCGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGACAAAGACTCAAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGACTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATACGAGTCAACTACTGCTAGCACACTTTGCATTCTTACGCGCCGCCCTACAAAGCCCCGCCACCGCTCACCTCCAGAGACTCCCGCCGTCAAGCGCCTACCGGCCGATTCTTCTGCTACTCGCTCTTGTATTCTGGAGAAAGAGATTCTCGCCATGATAACGTTGGTTAGATTTCGGAATTTATCGTACAAATTCCGAAACGAAACTGATTTAATTAGATGTTTTCATTCCGGAACGAATCTGAAATCCAATTCTCCGGATTCTTCCTCCTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCGTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAGGCTGCAGCAGCTTCCTTCGGCGCGGTTCGGTACATGGTGGCGTATGCGAATCGGCATGCGTTTAGTTATGTGCCGCAAGTTGTTAGAGAGCAGAGAAGAGAGAGGAAGATGCTTAATCAATTGGAGAGTAAGGGTGTGATTAAATCGATCGAGCCATATCTGTGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATTGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGCTAGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCCAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCTGATGTAGAATTGAGAAACGACATGGTTGAGATTATGGATAGGAAAAGAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGGATGTTTTGAAGGAGGCCAGGTTGAGATGTCTGAGGACAGTTGTTGTAGGGGATCTCAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAAAAGGAGGCTGTGTCTGTTGTTGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCAGTTGGAGAAGAAAGTGTTTGGTTTAGATGATATAGGCGAGGATGAAGATGTTGAAGAAGGTTCTGTTGATGGGGGACTTTGTAAGAATATGCAAAATGATGACAGGGGTGCTTGGTGGGATCTCAGCTCTGATGCTGATACTGAAACTGTTTCCCCACCATCATGGAAATGA 1656 44.5 MGRISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLCILTRRPTKPRHRSPPETPAVKRLPADSSATRSCILEKEILAMITLVRFRNLSYKFRNETDLIRCFHSGTNLKSNSPDSSSSTVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGAVRYMVAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRKRAECLVLVSDDSDFVDVLKEARLRCLRTVVVGDLNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKKVFGLDDIGEDEDVEEGSVDGGLCKNMQNDDRGAWWDLSSDADTETVSPPSWK 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3844079 3849947 - ClCG10G003100.2 Cla10g00294 281953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00294 551 CDD PIN_LabA-like 313 444 - -
Cla10g00294 551 Gene3D - 76 143 - -
Cla10g00294 551 Pfam Ribosomal protein S15 67 137 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cla10g00294 551 SUPERFAMILY beta-beta-alpha zinc fingers 302 328 IPR036236 -
Cla10g00294 551 ProSitePatterns Zinc finger C2H2 type domain signature. 305 326 IPR013087 -
Cla10g00294 551 SMART Ribosomal_S15_2 63 142 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cla10g00294 551 SUPERFAMILY S15/NS1 RNA-binding domain 59 135 IPR009068 -
Cla10g00294 551 PANTHER - 200 544 - -
Cla10g00294 551 Hamap 30S ribosomal protein S15 [rpsO]. 3 142 IPR023029 -
Cla10g00294 551 Gene3D - 28 75 - -
Cla10g00294 551 SMART Ribosomal_S13_N_2 1 53 IPR012606 GO:0003735|GO:0005840|GO:0006412
Cla10g00294 551 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 331 IPR013087 -
Cla10g00294 551 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 200 544 - -
Cla10g00294 551 Gene3D - 218 462 - -
Cla10g00294 551 CDD Ribosomal_S15p_S13e 63 136 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cla10g00294 551 ProSitePatterns Ribosomal protein S15 signature. 91 121 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cla10g00294 551 Pfam Ribosomal S13/S15 N-terminal domain 4 53 IPR012606 GO:0003735|GO:0005840|GO:0006412
Cla10g00294 551 Pfam NYN domain 375 455 IPR021139 GO:0004540
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00039 Cla-Chr6:431846 Cla10g00294 Cla-Chr10:3844079 1.00E-86 dispersed
Cla05g02062 Cla-Chr5:32329989 Cla10g00294 Cla-Chr10:3844079 7.78E-68 transposed
Cla01g00350 Cla-Chr1:3847008 Cla10g00294 Cla-Chr10:3844079 1.02E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61831 PF01936 NYN 1.10E-09 CL0280 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00294 - - csv:101211196 631.713