Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00301 ATGCATAGAAGGAGCAGAGGGGGCAGGGATGATTTTTTTGATTTCGGCGACCCCTTTGGTGGGTTTGGAGGCTTTCCGGGTCAAAGAAGCTTAATTTCTGGTTTCTTTGGTGGAAGGGATCCATTTGATGATCCTTTCTTCAGAAATCCATTTGGAAGCATGTTTGAGCCGAGCTTCTTTGGTGGTCCTGGAATTCCTTTTGCAAACATGCAACCATCTGGATTTCTTGATCATCAGGCCCCTGAGCCGAAAAGACCGAGGGGTCCAATTATTGAGGAGATAAATTCAGATGATGAAAAACAAGTAGTAAAAGAGAGTAAAAATCCGAAGAATTCATCCAAAAAGCCTCTTGTTGAAGACCCTGATGACGAAGGTGCGGAGAATGGGAACAAACATTTGCATCTCATGCATCATAGCAGTGGACCACATCATAGGCATATGCAGCCTCAAACTAGTTGCTTCACATTCCAGAGCTCCTCTGTAACTTATGGAAGCTCGAATGGGACTTATTATACTTCATCAAGGACAAGGAGAGCAGGGAGTGATGGCGTGGTCTTTGAAGAAAGCAAGGAGGCTGATACAGCAACCAGACAAGCAACTCATAGAGTTTCAAGGGGAATTCATAATAAGGGTCATTCAGTAACAAGGAAACTGAATCCTGATGGTAAGGTGGACACACTGCAAACTTTGCATAATCTTAATGAAGAGGAGCTACATGGTTTTGAAAATGCTTGGGCAAGGAATTCAAGAAGTTTGCCTGGGTGGCCTGGTAGTGCAAACGGCTTTGATAATATTGCTGGTGGCATTGGCCAAAATGGTCGAACGAGCAGAGGTGGGTTGGCACTTCCCTCTACTGATCAGCATCCTCAAGTGACTGGAACAACGTCTTTGGAAGGGTGCACTACCCCGGGTTCCTCTCATGCACAGCATGTGAACAGGAGTAGGAGAGATGCAAGTTATGGAGAACTGACATTGTTGAGGTCTAAAGTCGATGGAAATTTCCAAGAAAATATCATTCATAGCACTGAGAGAACAGAGGAGGAAGAAGATGAGTTCAACAAAGCAACTCCAAGTAGTGGTACGGACGCCGGAGCCGGAGCAAAGCACCACCCGACGCCGCTCCACCATCATTGCGGCGATGGGATTCTTCCTAAACGCTCGACCAAGAAACGCCCGGAGCCAGCGGCATCCGTCAGCGACGGATCGGTGTCCTGCAGCAAGTGCCGACCACATGCTCGAGAAAAGTTCTCTGTGGTTCCATTGGACAACAATGGCGTCGCTAAACAATTTTTCTCAATGGCGAGCCCTAATGGAATACTGAAATCAATAGTATCGTCGTTGACAAGAAAAAGCCCTAAATCGACGAACGAAGGAACGGATTGGGCGGCGAGAGAAGAACACTGGAAGATTGCTTTGGAAGAAATTTCGCATAAACTGATTCAAGCGACGAGGAAAAGAGATGAAGCGATTCTTGAAGCTTCGAGGCTGAAATATTCCATGGCGGAATTGGAGAAGAAACTCAATAAACTCGAAATCTATTGCCATACTTTGAAATCCGAACTCGATGAATGTGCTTCGAATCCGCGAAAACCTAGACCAGAAGTTCCAACAAACAGCGATTCGATTTCAGACAAAATAATCCAGAATTTCTTATCATCAGTTTCCGAATCGCGATCGTCGGTGAGGCAATTAAGCCGATCACTAGCGATGCAACTCCGTCAAATGGGAGGCAAAGTCTACGAGAGGATTCAATTCCTTCTCCAATCTCACGAAATCAAAATCCCTCTCTCGAAAAACCCTAGAACTTCACTCATCTTCCATCTCGAAGCCATTCTAAACAGAGCATTCTTCGAGGATTTCGAATCGATAGGGTTTCAGAAGAACTCACCAAATCAGATCTTAAACCCTTCGGATCGGACTGAATCGAACATCGCGTCGTTCAATCGGCTTCATCGGCTAAGTTGGGAGGAGGTTCTGAGCAAAGGAACGAGGCATTTCAGTGAAGACTTCAGCAGATTCTGTGATCGGAAGATGAGCGACATTGTTGCGATGCTCGAGTGGAACAGAGCTTGGCCGGAGCCGCTACTGCAGGCGTTCTTTGCGGCGGCAAAGAGCGTTTGGCTTGTTCATCTTCTCGCTACCGCCGTTCACCCGAGCTTGCCGATATTTAGAGTGGATTCCGGCGTGAGATTTGACGGCATTTACATGGAGGATATCGCCGGTGATAAAGCAAGAGAACTGGCTCCGGCGACGGTGAGAATAATGGTGTCGCCGGGATTTTATGTGTTTGATAATTTGATAAAGTGTAAGGTTCTGTGTAGGTATCACATTAATCTTAATAATTAA 2346 46.12 MHRRSRGGRDDFFDFGDPFGGFGGFPGQRSLISGFFGGRDPFDDPFFRNPFGSMFEPSFFGGPGIPFANMQPSGFLDHQAPEPKRPRGPIIEEINSDDEKQVVKESKNPKNSSKKPLVEDPDDEGAENGNKHLHLMHHSSGPHHRHMQPQTSCFTFQSSSVTYGSSNGTYYTSSRTRRAGSDGVVFEESKEADTATRQATHRVSRGIHNKGHSVTRKLNPDGKVDTLQTLHNLNEEELHGFENAWARNSRSLPGWPGSANGFDNIAGGIGQNGRTSRGGLALPSTDQHPQVTGTTSLEGCTTPGSSHAQHVNRSRRDASYGELTLLRSKVDGNFQENIIHSTERTEEEEDEFNKATPSSGTDAGAGAKHHPTPLHHHCGDGILPKRSTKKRPEPAASVSDGSVSCSKCRPHAREKFSVVPLDNNGVAKQFFSMASPNGILKSIVSSLTRKSPKSTNEGTDWAAREEHWKIALEEISHKLIQATRKRDEAILEASRLKYSMAELEKKLNKLEIYCHTLKSELDECASNPRKPRPEVPTNSDSISDKIIQNFLSSVSESRSSVRQLSRSLAMQLRQMGGKVYERIQFLLQSHEIKIPLSKNPRTSLIFHLEAILNRAFFEDFESIGFQKNSPNQILNPSDRTESNIASFNRLHRLSWEEVLSKGTRHFSEDFSRFCDRKMSDIVAMLEWNRAWPEPLLQAFFAAAKSVWLVHLLATAVHPSLPIFRVDSGVRFDGIYMEDIAGDKARELAPATVRIMVSPGFYVFDNLIKCKVLCRYHINLNN 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3910416 3921377 + ClCG10G003180.2 Cla10g00301 281960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00301 781 MobiDBLite consensus disorder prediction 340 407 - -
Cla10g00301 781 MobiDBLite consensus disorder prediction 70 149 - -
Cla10g00301 781 PANTHER CYCLIN-DEPENDENT KINASE-LIKE PROTEIN 338 776 - -
Cla10g00301 781 MobiDBLite consensus disorder prediction 373 393 - -
Cla10g00301 781 MobiDBLite consensus disorder prediction 182 198 - -
Cla10g00301 781 MobiDBLite consensus disorder prediction 340 355 - -
Cla10g00301 781 Pfam Myelodysplasia-myeloid leukemia factor 1-interacting protein 91 247 IPR019376 -
Cla10g00301 781 PANTHER CYCLIN-DEPENDENT KINASE-LIKE PROTEIN 338 776 IPR042316 -
Cla10g00301 781 MobiDBLite consensus disorder prediction 269 316 - -
Cla10g00301 781 MobiDBLite consensus disorder prediction 80 134 - -
Cla10g00301 781 MobiDBLite consensus disorder prediction 277 309 - -
Cla10g00301 781 MobiDBLite consensus disorder prediction 182 202 - -
Cla10g00301 781 Coils Coil 472 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00301 - - - csv:101204074 786.949
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00347 Cla10g00301 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02272 Cla-Chr2:37833126 Cla10g00301 Cla-Chr10:3910416 2.02E-76 dispersed
Cla07g00973 Cla-Chr7:25929463 Cla10g00301 Cla-Chr10:3910416 1.57E-07 dispersed
Cla10g00301 Cla-Chr10:3910416 Cla11g01701 Cla-Chr11:30600012 1.19E-07 dispersed
Cla06g00037 Cla-Chr6:421537 Cla10g00301 Cla-Chr10:3910416 9.50E-56 transposed
Cla01g00347 Cla-Chr1:3815494 Cla10g00301 Cla-Chr10:3910416 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g478 Blo02g01063 Blo03g00179 . Bda08g00557 Bpe05g00601 . . . Cmo06g00774 Cmo16g01086 . Cma15g01165 . Car15g01054 . Cpe14g00859 . . . . . . . . Cla10g00301 Cam10g0313 Cec10g0324 Cco10g0316 Clacu10g0310 Cmu10g1149 Cre10g0559 Cone8ag0363 Cone12ag0353 . . Lsi07g01348 Csa05g00372 Chy09g01138 Cme06g02635 Blo03g00393 . Bda07g00023 . . . Bma05g00782 Bma12g00139 . . Cmo15g01227 Cma06g00751 . Car06g00672 Car16g00990 Cpe08g00768 Cpe13g00207 Bhi12g00371 . . Lac11g2215 Hepe06g1173 . Lcy12g1756 Cla01g00347 Cam01g0363 Cec01g0359 Cco01g0372 Clacu01g0366 Cmu01g0346 Cre09g2163 Lsi09g00374 Csa03g00323 Chy06g02001 Cme09g01669
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001682 2 1 3 4 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 3 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00301 Cla_Chr10 FPKM 53.177433 57.107632 2.623363 3.213645 36.634312 38.905411 36.509045 2.927246 1.742532 1.698604