Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00314 ATGGATGAGGAAATGGAGGTTGAGCCGGTTGTGTTTGAGGCTTATGAAGTCGACATTGAGTATGAGTTTGATGCGGCTAGGTATTTTGATTTCACTCGCGAGGAGAGTTTTGATGAGGCTTGTCAAGCTGAGCTTTGGTTCCAGTCTGCTGGAAGCTACCCTCCTTCTCTCGTGGACTTTGTTTCTTTGATTTCTGTGGAGTCGGGAGTGTGTGGAAAGGGGACTGGAATTTGTGATTTTCTTGAAGTGTTTGTTATGAGGACGTTTGTAGCAAAACTGTTTTTGAGGGAAGAGTGTCTTTTCGCTATTGAAAATGCATCTAAAAAATCTGAGGACCAGAACAAAACAGTTGATTCGCTTAAGGGTGGCAGCCAAGAAGCTGGATCAGTACGCGAGAATGAAAGAGGTACATTTTTTGGTTTAAGAACGTTCAGTCTTCTGCTCATCTCTGCTTTGATATACTATGCTGGTTCACGAGGAATCTTCACCAACTTACGAGATGGAGACGTACAAAAAATTCACAGTCAACATCTTCAATTTACATCAGGTGGTCTGTCTGTTTCTGAAGAATTAACTAGATCTACATCATGCAATCATCCATCTCTGAACAAACCAAAAGTTAAACCCCCATCTTCTGTCAAACTATCTAAACCCCGGGGGACTACTCTGATGAAACCAACAGCAAGCCACTTAGCGAGACAAAATTTCCCTACTCAAGCTACTGATATCAAGTTGCAGAGAGTACTTGTTAAAAACAATGAGACAAGTGTCTATAGTTCTGGGATCGAAAGTCAAGCTATCAAGAAGCAGAAGCTGGATGGAGGTCACTCCCGTAAGGTGAATGAAATAAAGCAGCAGACTAGTTTAGTCCACAAGCTTCCCAAAAAGGATGGAGTAGCTGATAAAACTACTTTGAATGCCAAGCTGAAGATTACAATTCCTAGGCAGCCTGACCTTGAAACAGCTCATAGGGCACATAGAACAAGACTGAAAAGTAGGATGGAAGAAGATTGCGAGACAACAACTACTCGAAGGTTTAGAGCCCGTCCGTTAAACAGAAAAATTTTAGAGGCTCCATCACTTCCGCTCCTGAAGAAAAGCACTCCCAAATTGCCCGAGTTTCAAGAATTTCACTTGAGGACGTTGGAGAGGGCCATGCAAAATACTTCTGCTGTTTCATCTTCAGCCTTTCATCATGATTATTCTGACATTACAGTCACCAGAAATTTCGAGTCTAGAAGATCAAATGCCATTGATGATCAAAAGCATGATGAGTATCATGTAATGCAAAATTTCAAGGCATATCCTCTTAATAGGAAGGTAAATAATTACTTTATTTGTGCTTTGCGTGATGATGTTGAACAATTAGCCTTATTTATGGCGTGCCCGGTGCAGATATTTTCAAGTAAAGGTGAAATGGGTGTTTTTAGAAATAGTAAGCAAGAAACCACAATACCAATGGAATTTAAATTCCATAGCGAGAAGAGAATTCTGCAACCACCAACAGAACTTTTCAACAAGCATGATGAGTATCATGTAATGCAAAATTTCAAGGCATATCCTCTTAATAGGAAGATATTTTCAAGTAAAGGTGAAATGGGTGTTTTTAGAAATAGTAAGCAAGAAACCACAATACCAATGGAATTTAAATTCCATAGCGAGAAGAGAATTCTGCAACCACCAACAGAACTTTTCAACAAGATAACTCAATTGGTGAAAGAAACACCTCCATTTGCGGGAAAACAGATTTATTTGGGCAATAATGGATGCATATCTGATTCCTGCAACAACCAGTTGACCGTGAGCATTCAGAATTCTAAAAGAATGGTTTCTTTCTGCTGGGGCATCTGA 1851 40.03 MDEEMEVEPVVFEAYEVDIEYEFDAARYFDFTREESFDEACQAELWFQSAGSYPPSLVDFVSLISVESGVCGKGTGICDFLEVFVMRTFVAKLFLREECLFAIENASKKSEDQNKTVDSLKGGSQEAGSVRENERGTFFGLRTFSLLLISALIYYAGSRGIFTNLRDGDVQKIHSQHLQFTSGGLSVSEELTRSTSCNHPSLNKPKVKPPSSVKLSKPRGTTLMKPTASHLARQNFPTQATDIKLQRVLVKNNETSVYSSGIESQAIKKQKLDGGHSRKVNEIKQQTSLVHKLPKKDGVADKTTLNAKLKITIPRQPDLETAHRAHRTRLKSRMEEDCETTTTRRFRARPLNRKILEAPSLPLLKKSTPKLPEFQEFHLRTLERAMQNTSAVSSSAFHHDYSDITVTRNFESRRSNAIDDQKHDEYHVMQNFKAYPLNRKVNNYFICALRDDVEQLALFMACPVQIFSSKGEMGVFRNSKQETTIPMEFKFHSEKRILQPPTELFNKHDEYHVMQNFKAYPLNRKIFSSKGEMGVFRNSKQETTIPMEFKFHSEKRILQPPTELFNKITQLVKETPPFAGKQIYLGNNGCISDSCNNQLTVSIQNSKRMVSFCWGI 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4152366 4158056 + ClCG10G003340.1 Cla10g00314 281973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00314 616 PANTHER OS06G0130200 PROTEIN 508 576 - -
Cla10g00314 616 PANTHER OS06G0130200 PROTEIN 5 441 - -
Cla10g00314 616 PANTHER OS06G0130200 PROTEIN 451 507 - -
Cla10g00314 616 Pfam Cell cycle regulated microtubule associated protein 309 441 IPR027330 -
Cla10g00314 616 Pfam Cell cycle regulated microtubule associated protein 507 551 IPR027330 -
Cla10g00314 616 MobiDBLite consensus disorder prediction 195 220 - -
Cla10g00314 616 PANTHER TARGETING PROTEIN FOR XKLP2 508 576 IPR009675 GO:0005819|GO:0005874|GO:0032147|GO:0060236
Cla10g00314 616 PANTHER TARGETING PROTEIN FOR XKLP2 5 441 IPR009675 GO:0005819|GO:0005874|GO:0032147|GO:0060236
Cla10g00314 616 PANTHER TARGETING PROTEIN FOR XKLP2 451 507 IPR009675 GO:0005819|GO:0005874|GO:0032147|GO:0060236
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00314 - - - csv:101206074 738.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00236 Cla-Chr7:2606357 Cla10g00314 Cla-Chr10:4152366 2.07E-09 dispersed
Cla09g01281 Cla-Chr9:19188680 Cla10g00314 Cla-Chr10:4152366 6.28E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g451 Blo02g01073 . . . . . . . . Cmo16g01075 . . . . . Cpe14g00849 . . . . . . . . Cla10g00314 Cam10g0329 Cec10g0342 Cco10g0334 Clacu10g0325 Cmu10g1165 Cre10g0575 . . . . Lsi07g01363 . . Cme06g02648 . . . . . . Bma05g00791 Bma12g00115 . . . . Cma16g01029 . Car16g00980 . . . . . . . . . . . . . . . . . Csa03g00337 Chy06g01988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007341 0 3 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00314 Cla_Chr10 FPKM 6.815762 6.002565 9.234111 8.913728 4.468756 3.849624 4.403194 5.569123 6.08582 7.113805