Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00327 ATGACGTTTTTATGCTACAAGATAATCGTTTCCCCTTATCTTTTGCTCATATTCATTTTCACCAATCAATTAGTGGAATCGCAAACCCTAATCAGCCCCAATTTTGACAAATCGCTTCTCCCTTTTGGCTCACAATCAACCACTGGAATTCTCTTCAGCAGCTGCAATCGCAATGAAGTCAACCCCGATGCGACTTTCACGATGCTCAACAACTGCTCCTTCGCCGTCTGGGCAGCTGCCATACCTGGCGGTGGCCGCCGCCTCGACAGCCGCCAGACTTGGCTCTTAAACGTACAACCCGGCACAACGGGAGGACGAATTTGGGGCAGAACTAATTGTTCCTTCGACAACTCAGGGAAAGGAAATTGTGAGACCGGCGACTGCGGCGGCGTCCTTCAGTGCGAAACCTACGGCTCACCGCCCAACACTGTGGCTGAATTTGCCCTCAACCAATTCAACGATCTGGATTTCTTCGATATCTCTCTGGTCGACGGGTTCAATATTCCGATGGAATTCAGACCGACGTCTAAAACGGGATGTAGCAGGGGCGTCCGTTGCGCCGCCGATATCAAGGGGCAGTGCCCGGCGGTGCTGAGGGCGGCCGGCGGGTGTAACAACCCGTGCACGGTGTTCAAGACGGAGGAGTATTGTTGCAATAATGGAAAGTGTGGGCCCACAGACTTTTCGAAGTTTTTCAAAGAGAGGTGTCCCGATGCTTACAGTTACCCAAAAGATGACGCGACTAGCACATTTACGTGTCCTAGAGGAGCTTGTGGTTATGGAAACTTGTTCACAAACGGCTACGGCGTCGACACGGTGGCTCTAAGCTCTACCCTCTTTAATAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGCGCCCAATCCAAAGCTTGTTATCCTAATGTTGCTTTCACGACGGTAACAGCGACCAACCTTTGCCCGCCGAATTGGGCCAAACCTTCCAATGCCGGTGGATGGTGCAACCCACCGAGGGTTCACTTCGACATGTCAAAGCCAGCCTTCATGAAGATCGCCAACTGGAAGGCCGGGATCATCCCCGTTGCGTACCGACGAGTACCGTGCGGCAAAAAAGGTGGCCTTCGGTTCACACTTCAGGGAAATGGCTACTGGCTTTTGGCGTACGTAATGAACGTCGGCGGTGGCGGAGACGTGTCGGGAATGTGGGTGAAAGGTAGCAAAACAGGGTGGATCAAAATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTTCAACTTTGGTTGGCCAATCTTTGTCTTTTAGAATCACTTCTTACACAACCAAAGAGACCATCACAGCTTGGAATGTTGCACCTTCTAATTGGAGGTTTGGTTCGACCTACAATGCCAACATCAACTTTCGCTAA 1392 50.57 MTFLCYKIIVSPYLLLIFIFTNQLVESQTLISPNFDKSLLPFGSQSTTGILFSSCNRNEVNPDATFTMLNNCSFAVWAAAIPGGGRRLDSRQTWLLNVQPGTTGGRIWGRTNCSFDNSGKGNCETGDCGGVLQCETYGSPPNTVAEFALNQFNDLDFFDISLVDGFNIPMEFRPTSKTGCSRGVRCAADIKGQCPAVLRAAGGCNNPCTVFKTEEYCCNNGKCGPTDFSKFFKERCPDAYSYPKDDATSTFTCPRGACGYGNLFTNGYGVDTVALSSTLFNNGYACGTCFQIKCAQSKACYPNVAFTTVTATNLCPPNWAKPSNAGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVAYRRVPCGKKGGLRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRITSYTTKETITAWNVAPSNWRFGSTYNANINFR 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4236919 4248019 - ClCG10G003470.1 Cla10g00327 281986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00327 463 ProSiteProfiles Thaumatin family profile. 63 264 IPR001938 -
Cla10g00327 463 SMART tha2 66 259 IPR001938 -
Cla10g00327 463 Pfam Thaumatin family 70 260 IPR001938 -
Cla10g00327 463 Pfam Lytic transglycolase 272 358 IPR009009 -
Cla10g00327 463 Pfam Expansin C-terminal domain 370 447 IPR007117 -
Cla10g00327 463 PANTHER EXPANSIN-A15 240 463 IPR002963 GO:0009664
Cla10g00327 463 SUPERFAMILY Osmotin, thaumatin-like protein 64 258 IPR037176 -
Cla10g00327 463 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 378 458 IPR007117 -
Cla10g00327 463 Gene3D - 233 363 IPR036908 -
Cla10g00327 463 SUPERFAMILY Barwin-like endoglucanases 249 386 IPR036908 -
Cla10g00327 463 SMART dpbb_1 272 358 IPR007112 -
Cla10g00327 463 SUPERFAMILY PHL pollen allergen 365 457 IPR036749 -
Cla10g00327 463 PANTHER EXPANSIN-A7 240 463 - -
Cla10g00327 463 PRINTS Expansin signature 307 317 IPR002963 GO:0009664
Cla10g00327 463 PRINTS Expansin signature 379 400 IPR002963 GO:0009664
Cla10g00327 463 PRINTS Expansin signature 267 281 IPR002963 GO:0009664
Cla10g00327 463 PRINTS Expansin signature 326 343 IPR002963 GO:0009664
Cla10g00327 463 PRINTS Expansin signature 343 356 IPR002963 GO:0009664
Cla10g00327 463 PRINTS Expansin signature 367 379 IPR002963 GO:0009664
Cla10g00327 463 PRINTS Expansin signature 444 460 IPR002963 GO:0009664
Cla10g00327 463 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 255 368 IPR007112 -
Cla10g00327 463 ProSitePatterns Thaumatin family signature. 119 134 IPR017949 -
Cla10g00327 463 Gene3D - 364 463 IPR036749 -
Cla10g00327 463 Gene3D Thaumatin 64 204 IPR037176 -
Cla10g00327 463 PRINTS Expansin/Lol pI family signature 276 294 IPR007118 GO:0005576
Cla10g00327 463 PRINTS Expansin/Lol pI family signature 405 419 IPR007118 GO:0005576
Cla10g00327 463 PRINTS Expansin/Lol pI family signature 444 458 IPR007118 GO:0005576
Cla10g00327 463 PRINTS Expansin/Lol pI family signature 254 272 IPR007118 GO:0005576
Cla10g00327 463 PRINTS Expansin/Lol pI family signature 351 367 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00320 Cla10g00327 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00289 Cla-Chr1:3052068 Cla10g00327 Cla-Chr10:4236919 6.25E-08 dispersed
Cla01g00291 Cla-Chr1:3060780 Cla10g00327 Cla-Chr10:4236919 5.19E-100 dispersed
Cla10g00327 Cla-Chr10:4236919 Cla04g00803 Cla-Chr4:23068149 4.93E-83 dispersed
Cla01g00320 Cla-Chr1:3414812 Cla10g00327 Cla-Chr10:4236919 2.07E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00327 - - bhj:120091854 443.351