Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00328 ATGGCTGGTCGAATTTTTGAAACCTTGTCCTTTGGTGGGTCTCAACATGGTCAAGGTAATCAATCTTTGCCATTTTCCTCTGGAAATGCTTCATTGAAGATTTTGCTATTGCATGGTTATTTAGACATTTGGGTTAAAGGAGCTAAGAACCTTCCCAATTTGGATATGTTTCACAAGACTCTTGGGGATATGTTTTCAAAAGTGTCCTTTAAGGGTTCCAAAAACAGTGATGGGCAAAAGCCTCAAAAAGTCACTAGTGATCCCTATGTGACTATTTCTGTGTCAAATGCTGTGATTGGAAGAACTTTTGTGATTGATAACAATGAAAATCCTGTTTGGATGCAACATTTTAATGTTCCTGTAGCTCATTATGGTGCTGAGGTGCATTTTGTTGTTAAAGACCATGATGTTGTAGGATCACAAATCATGGGTGTTGTTGCAATTCCTGTGGAAGAAGTGTATTCCGGAGCCATAGTTGATGGAACGTACCCAATCTTAAATAGCAGTAGGAAGCCCTGTAAGCCTGGGGCAGTCTTGAGTTTGTCGATTCAGTATACTCCGGCTGACCAAGCGGCCATTTTTCATGGTGGAATGTATGCGTCTCCTGATCATCAGGGAGTTTCAGGCACATATTTCCCCCTTAGGAAGGGGGGTAAAGTTACGTTGTACCAAGATGCCCATGTTGACGATGGTTGTCTTCCAACAGATTTTAGGCTTCATGGTGGGGTTCAATATGAACATAGGAGCTGCTGGGATGACATCTCTGAATCGATTAGTCAGGCTCGCCGTTTGATCTATATTACAGGCTGGTCCGTGTACCATAGTGTTAAATTGGTTAGAGATGGAACGGCCAAAGAATGTATGTTAGGGGACCTTCTTAAAGCCAAGTCCCAAGAAGGAGTAAGAGTATTGCTTCTTATATGGGACGATCCAACTTCAACTAGTATGTTGGGATATAAGACGGTTGGGATGATGAATACAAATGATGAGGAGACTCGTCGGTTTTTTAAGAACTCATCAGTCCAAGTGATTTTGTGCCCACGATCAGGTGGAAAAGGTCATAGTTGGATTAAAAAACAGGAAGCTGGAACCATCTATACCCACCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGAAATTACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTTGATTTATGTTTGGGCCGATATGATACCTCGAGACATCCTCTTTTCCGGACATTGCAAACTACACATGTGGATGACTTCCATAACCCTAATTTTACGGGACCAACTACTGGCTGTCCAAGAGAACCATGGCATGATTTGCACTCCAAGATTGATGGTCCAGCGGCGTATGACGTCCTTGCAAATTTTGAGGAGCGCTGGATGAGAGCTTCAGAGCCTCATGGGCTTAAGAAGCTAAAGAGATTACATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATAACTGATGCTTCTCAACTTTGTAATAATGATCCAGAAGCTTGGAACGTCCAGATTTTTCGCTCAATTGATTCCAACTCCGTAAAAGGATTTCCTGACAAACCAAAAGATGCTATAAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAGTGCAATTCGAGCTGCTCAACGCTTCATTTACATCGAAAACCAGTACTTCCTTGGGTCATCTTATAATTGGAGGGCTAATAACTTAATACCAATGGAAATAGCCCTTAAGATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTTTCAGCATATGTGGTTATTCCCATGTGGCCAGAAGGTGCTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATACAAGGCGTTAGAGGAGGTTGGACTTCATAAAACATATGAGCCTCAAGACTACTTAAATTTCTTTTGCCTTGGAAACCGTGAGGTGCTCGATGTCAGAGACGGTGTTGAAGCCGGGAATGGAGAAAAGAATGCTCAATCACTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTACGTCTTATTGGGATCGGCAAAT 2136 41.01 MAGRIFETLSFGGSQHGQGNQSLPFSSGNASLKILLLHGYLDIWVKGAKNLPNLDMFHKTLGDMFSKVSFKGSKNSDGQKPQKVTSDPYVTISVSNAVIGRTFVIDNNENPVWMQHFNVPVAHYGAEVHFVVKDHDVVGSQIMGVVAIPVEEVYSGAIVDGTYPILNSSRKPCKPGAVLSLSIQYTPADQAAIFHGGMYASPDHQGVSGTYFPLRKGGKVTLYQDAHVDDGCLPTDFRLHGGVQYEHRSCWDDISESISQARRLIYITGWSVYHSVKLVRDGTAKECMLGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKNSSVQVILCPRSGGKGHSWIKKQEAGTIYTHHQKTVIVDADAGNYKRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDFHNPNFTGPTTGCPREPWHDLHSKIDGPAAYDVLANFEERWMRASEPHGLKKLKRLHEDVLLKIERIPEILGITDASQLCNNDPEAWNVQIFRSIDSNSVKGFPDKPKDAISRNLVCGKNVMIDMSIHSAYVSAIRAAQRFIYIENQYFLGSSYNWRANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGAPTSTPIQRILFWQSRTMQMMYEMIYKALEEVGLHKTYEPQDYLNFFCLGNREVLDVRDGVEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVLLGSAN 712
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 4258401 4263668 + ClCG10G003480.1 Cla10g00328 281987
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00328 712 SMART pld_4 690 712 IPR001736 GO:0003824
Cla10g00328 712 SMART pld_4 364 399 IPR001736 GO:0003824
Cla10g00328 712 Gene3D C2 domain 26 186 IPR035892 -
Cla10g00328 712 SUPERFAMILY Phospholipase D/nuclease 206 464 - -
Cla10g00328 712 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 187 IPR035892 -
Cla10g00328 712 ProSiteProfiles C2 domain profile. 15 163 IPR000008 -
Cla10g00328 712 SUPERFAMILY Phospholipase D/nuclease 533 712 - -
Cla10g00328 712 PIRSF PLD_plant 26 712 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cla10g00328 712 Pfam Phospholipase D Active site motif 691 712 IPR001736 GO:0003824
Cla10g00328 712 Pfam Phospholipase D Active site motif 365 399 IPR001736 GO:0003824
Cla10g00328 712 Gene3D Endonuclease Chain A 239 478 - -
Cla10g00328 712 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 6 712 - -
Cla10g00328 712 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 399 IPR001736 GO:0003824
Cla10g00328 712 Pfam C2 domain 39 165 IPR000008 -
Cla10g00328 712 SMART C2_3c 40 162 IPR000008 -
Cla10g00328 712 Gene3D Endonuclease Chain A 510 712 - -
Cla10g00328 712 CDD C2_plant_PLD 35 186 - -
Cla10g00328 712 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 690 712 IPR001736 GO:0003824
Cla10g00328 712 PANTHER PHOSPHOLIPASE D 6 712 IPR015679 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00016 Cla-Chr6:201686 Cla10g00328 Cla-Chr10:4258401 0 dispersed
Cla09g00253 Cla-Chr9:2509973 Cla10g00328 Cla-Chr10:4258401 0 dispersed
Cla10g00328 Cla-Chr10:4258401 Cla08g01396 Cla-Chr8:26830441 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00328 K01115 - csv:101208016 1402.11