Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g00332 | ATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATCGTTCGTGTCAAATTT | 618 | 41.75 | MTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRVKF | 206 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 4329418 | 4338803 | - | ClCG10G003520.1 | Cla10g00332 | 281991 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g00332 | 206 | PANTHER | REPLICATION FACTOR C SUBUNIT 2 | 1 | 202 | - | - | |
| Cla10g00332 | 206 | Pfam | Replication factor C C-terminal domain | 113 | 198 | IPR013748 | - | |
| Cla10g00332 | 206 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 95 | IPR027417 | - | |
| Cla10g00332 | 206 | Gene3D | - | 113 | 205 | - | - | |
| Cla10g00332 | 206 | Gene3D | - | 1 | 46 | IPR027417 | - | |
| Cla10g00332 | 206 | Gene3D | - | 49 | 112 | - | - | |
| Cla10g00332 | 206 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 1 | 202 | - | - | |
| Cla10g00332 | 206 | CDD | HLD_clamp_RFC | 48 | 110 | - | - | |
| Cla10g00332 | 206 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 112 | 202 | IPR008921 | GO:0003677|GO:0006260 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla10g00332 | Cla-Chr10:4329418 | Cla11g01553 | Cla-Chr11:29267069 | 7.22E-22 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g00332 | K10755 | - | csv:101208984 | 396.741 |