Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g00333 | ATGGCATCTTCAAGGTCCCCGAATGGATCTTCTGATGATATCCTCGATACCTCCCCTTTGATGGGGAATTCGAACCGGTCGCCGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTCTACGTCAGGCGGCGAGGTTTCTTAGGCAGGCCAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTTATTCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTCAGCCGCAACGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGCATTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGCCGCCGGCAGCTACGATATTCGACCTTCAATTCAATGGACGAGGGAAATTCTGCACGCGGGATTTCGGGTTTGGGCTCGAGGGCAAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGATAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACCATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACACGTCTCTCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGGTACTAAAAGGTTGAAAGAGTTAATTAAGGCACGTTTTGGCTTGGATTGGGTGTACTTGGGAGAGGCGGAAAGCTCTAGAATTCTTATCAAAGATTCTGTTATGGAAGGTGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGACGACGCCGAGAAATTCTCCACTGATGTACAGGAACCTCTTGGTGGGATAATGACCGAGTGTGGTACAGATTCACCCATTGAACGCGCCCTCTCGCAGGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATATGAGGATGGTGTCGAGCTACGAGAGCTCCCATGTGGTCACCACTTCCACTGTGCCTGCGTCGATAAGTGGCTGTATATTAACGCCACCTGTCCTCTCTGCAAGTACAACATCCTGAAAAATAGCAATCTTGCTCAAGAGGAAGTTTAA | 1257 | 47.33 | MASSRSPNGSSDDILDTSPLMGNSNRSPDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPSMPLRLWIVGYAFQCILHMVCVCVEYRRRRQLRYSTFNSMDEGNSARGISGLGSRANSSHYVSLAQLDDNDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQGTKRLKELIKARFGLDWVYLGEAESSRILIKDSVMEGATKEDVEQLSKFKFRKVDDAEKFSTDVQEPLGGIMTECGTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNLAQEEV | 418 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 4344080 | 4349249 | + | ClCG10G003530.2 | Cla10g00333 | 281992 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g00333 | 418 | SUPERFAMILY | RING/U-box | 354 | 410 | - | - | |
| Cla10g00333 | 418 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 6 | 273 | - | - | |
| Cla10g00333 | 418 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 306 | 418 | - | - | |
| Cla10g00333 | 418 | PANTHER | TARGET OF ERK KINASE MPK-1 | 306 | 418 | - | - | |
| Cla10g00333 | 418 | SMART | ring_2 | 363 | 403 | IPR001841 | - | |
| Cla10g00333 | 418 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Cla10g00333 | 418 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 348 | 410 | IPR013083 | - | |
| Cla10g00333 | 418 | PANTHER | TARGET OF ERK KINASE MPK-1 | 6 | 273 | - | - | |
| Cla10g00333 | 418 | CDD | RING-H2_RNF111_like | 362 | 406 | - | - | |
| Cla10g00333 | 418 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Cla10g00333 | 418 | Pfam | Ring finger domain | 362 | 404 | IPR001841 | - | |
| Cla10g00333 | 418 | ProSiteProfiles | Zinc finger RING-type profile. | 363 | 404 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00192 | Cla-Chr5:1731311 | Cla10g00333 | Cla-Chr10:4344080 | 3.56E-145 | dispersed | |
| Cla07g01061 | Cla-Chr7:27190640 | Cla10g00333 | Cla-Chr10:4344080 | 2.13E-13 | dispersed | |
| Cla09g02094 | Cla-Chr9:38472958 | Cla10g00333 | Cla-Chr10:4344080 | 3.36E-24 | dispersed | |
| Cla10g00333 | Cla-Chr10:4344080 | Cla10g01576 | Cla-Chr10:31229297 | 9.89E-49 | dispersed | |
| Cla10g00333 | Cla-Chr10:4344080 | Cla06g01657 | Cla-Chr6:30084390 | 1.09E-13 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g00333 | - | - | csv:101209228 | 700.664 |