Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00333 ATGGCATCTTCAAGGTCCCCGAATGGATCTTCTGATGATATCCTCGATACCTCCCCTTTGATGGGGAATTCGAACCGGTCGCCGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTCTACGTCAGGCGGCGAGGTTTCTTAGGCAGGCCAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTTATTCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTCAGCCGCAACGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGCATTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGCCGCCGGCAGCTACGATATTCGACCTTCAATTCAATGGACGAGGGAAATTCTGCACGCGGGATTTCGGGTTTGGGCTCGAGGGCAAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGATAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACCATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACACGTCTCTCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGGTACTAAAAGGTTGAAAGAGTTAATTAAGGCACGTTTTGGCTTGGATTGGGTGTACTTGGGAGAGGCGGAAAGCTCTAGAATTCTTATCAAAGATTCTGTTATGGAAGGTGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGACGACGCCGAGAAATTCTCCACTGATGTACAGGAACCTCTTGGTGGGATAATGACCGAGTGTGGTACAGATTCACCCATTGAACGCGCCCTCTCGCAGGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATATGAGGATGGTGTCGAGCTACGAGAGCTCCCATGTGGTCACCACTTCCACTGTGCCTGCGTCGATAAGTGGCTGTATATTAACGCCACCTGTCCTCTCTGCAAGTACAACATCCTGAAAAATAGCAATCTTGCTCAAGAGGAAGTTTAA 1257 47.33 MASSRSPNGSSDDILDTSPLMGNSNRSPDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPSMPLRLWIVGYAFQCILHMVCVCVEYRRRRQLRYSTFNSMDEGNSARGISGLGSRANSSHYVSLAQLDDNDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQGTKRLKELIKARFGLDWVYLGEAESSRILIKDSVMEGATKEDVEQLSKFKFRKVDDAEKFSTDVQEPLGGIMTECGTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNLAQEEV 418
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 4344080 4349249 + ClCG10G003530.2 Cla10g00333 281992
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00333 418 SUPERFAMILY RING/U-box 354 410 - -
Cla10g00333 418 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 273 - -
Cla10g00333 418 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 306 418 - -
Cla10g00333 418 PANTHER TARGET OF ERK KINASE MPK-1 306 418 - -
Cla10g00333 418 SMART ring_2 363 403 IPR001841 -
Cla10g00333 418 MobiDBLite consensus disorder prediction 1 36 - -
Cla10g00333 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 410 IPR013083 -
Cla10g00333 418 PANTHER TARGET OF ERK KINASE MPK-1 6 273 - -
Cla10g00333 418 CDD RING-H2_RNF111_like 362 406 - -
Cla10g00333 418 MobiDBLite consensus disorder prediction 1 28 - -
Cla10g00333 418 Pfam Ring finger domain 362 404 IPR001841 -
Cla10g00333 418 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00192 Cla-Chr5:1731311 Cla10g00333 Cla-Chr10:4344080 3.56E-145 dispersed
Cla07g01061 Cla-Chr7:27190640 Cla10g00333 Cla-Chr10:4344080 2.13E-13 dispersed
Cla09g02094 Cla-Chr9:38472958 Cla10g00333 Cla-Chr10:4344080 3.36E-24 dispersed
Cla10g00333 Cla-Chr10:4344080 Cla10g01576 Cla-Chr10:31229297 9.89E-49 dispersed
Cla10g00333 Cla-Chr10:4344080 Cla06g01657 Cla-Chr6:30084390 1.09E-13 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00333 - - csv:101209228 700.664