Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00338 ATGGCGATGCGAGAATTGGTTACTGGAGCAGCTTCTTGTGCGGTTCCTGGTTCTTCTTCTTCTTCTAACCCTCTCGGTGCTCTTGCCAACGCTCTAATTGGCTCCTCTTCCAAGACCCAGGAAAGGTTACGGGAAATTCCTACATCGCAGCTCACAGGTCCTGAAAGGCCTTTTGCCCCTGAGACCCATGAGCAGCTCCCTGGGTCTGAGTTTGATCACCCACCGCTTCAACCCAATCAGCAGGCGTCAAATTTTTTTAATGGCTTCCACTCGGCTGCCAATCACAGTGGTATGGCCTCTGCATGGAATGAGGTACAGGGCGGTCCTCCTCCTGCCCACTTGAGAGAAATGCAACCAAGTCTTGCTGAATTTGATCGTATTTATGACCAAGTTCCTGCTTCTCAGCATCAACCGATATTGGATGGGCCACCACAAAGAGTGCTATCAACCTTTTTGCACTCATTTGTAGAGAGTAGCCGTGGTGGAGTACCTTTTCATCCAACCCCTCTGCCTTTATTGGGACTATCTGAAGGCGATAAACAATGTATACGGGATCGTAGTAGCATAATGGCTCGACATTTCTTTGCAGATAAGAGTGAAGACTTCATAAATGCACAGGTAAGTGCACTTCTATCTTCCTTGGACATCGACACCAGTAAACAGGTTAGGGGGCCTCAACCTGGTAGGTTCCATGAGTTGGAGGATTATTGGAATGAATCTCAAGCTCTCCAGAGACCTGGTGGTCATATTGCAGATGGGTGGGCTTCTGAATATAGCCTTAACAGGGAAAAGTATGGTGGTCATGACGCTTGGGCTCAATCCTTTGAACAACAATATGGTGCCAATGGCTGGGCCTCTGAGTTTGAGCAGGAGAAGTTTCAGTTAGCATCGGCAGAAAGAATTGGTGGTAATATGATGAACTTATCTGCAATGGAGCAGACTCGCAAGCTTGCAAATACATTAGCTGAAAATAACGACCCTAAATTTCAGAACTCAAAGTTCCTTCAGTTTGTTTCGAAGATGAGTAGGGGTGAACTTATTATTGATGATAATCAAGTCAAGCCAAACTCTTTATCTCCAACAGATAACTGGGCTTCCGAGTATCAGCAACAGTATAGTGGAGGTCTTCCCTGGGCTGATGAATTTGTTTCTAATCAAACTAATCGGTGGGCTGATGAGTTTGCTGAAGAGAAGAGACATGTGTCAGATGATCCATGGGTAAATGAATTTTCCAAGTTGCACATGCAAGACTGGGTGGAAGAATTTGGTCAGCAGGTTGGAGAAGGGGCTTCTGGAGAGGTCGACAATTGGGCAAATGCATATGATGAGTATGTAAATGAACAAGTAGCTGCCAAGGGTAAAACGGATGCTTCAAAGGGAATCTATGTCTTTTCTGATATGAACCCATATGTTGGTCATCCTAATCCCTTGAAGGAAGGCCAAGATCTGTTCCGTAAAGGCCTTCTGAGTGAGGCAGTGCTTGCTTTAGAGGCTGAAGTTATGAAAAACCCTGAAAATGCTGAAGGCTGGAGGCTTCTTGGAATTGCACATGCTGAAAATGATGATGATCAACAGGTGTTTTACGCTCTTGATGTAGAATTTTTGGCTTATAAGACAAACTTGGCTATTGCTGCCATGAAACGGGCACTAGATGTTGACCCTACAAATTTAGAGGTGCTTCTTGCACTTGGTGTGAGTCACACAAATGAATTAGAGCAAGCAGCTGCATTAAGATACTTGTATGGATGGTTACAGCATCACCCAAAGTATGGGACACTTGCAAAACCGGAGCTTTCTGATTCGTTGTACTATGCTGATGTAAGCATCATGCTATTTCTTGTGCTAAATCTGGATTTGGATGTTGTAGCATATAGCGAAGCATGTGTGGTGTGGGTCGAAGGGGCAAGTGTTAATGTTCGTTGGGTTGGTGCAGTTCATGTTGTTCAGCCTAGGGCCCTTGAGTTAGGCTTTAGGCTTGGGCCCGCTGATGGGTCACCTCTCACGTTTGTCCAGGAGCACAAAGTAGCTGGCTTATTTAACGAAGCTGCACAAATGTTTCCTGATGATGTTGATGTGCACATAGTACTTGGCGTCCTTTATAATTTGTCCAGAGAATTTGACAAAGCTATTGCATCCTTTCAGACAGCCTTGAAACTAAAGCCGCAAGATTATTCTCTTTGGAACAAGCTAGGTGCTACACAAGCTAACAGCATTCAAAGTGCTGATGCTATATTAGCTTATCAACAGGCACTTGATTTGAAGCCTAATTACGTACGTGCCTGGGCCAATATGGGAATCAGTTATGCTAATCAGGGCCTCTATGAGGAATCAATCAAGTACTATGTGAGATCACTTAGTATGAATCCAAAGGCAGACAATGCATGGCAATATTTAAGAATTTCACTAAGCTGTGCATCAAGGAACGACATGCTGGAAGCCTGTGATTCCCGCAATCTTGATGCTCTTCAGAAGGAGTTCCCATTATGA 2487 44.63 MAMRELVTGAASCAVPGSSSSSNPLGALANALIGSSSKTQERLREIPTSQLTGPERPFAPETHEQLPGSEFDHPPLQPNQQASNFFNGFHSAANHSGMASAWNEVQGGPPPAHLREMQPSLAEFDRIYDQVPASQHQPILDGPPQRVLSTFLHSFVESSRGGVPFHPTPLPLLGLSEGDKQCIRDRSSIMARHFFADKSEDFINAQVSALLSSLDIDTSKQVRGPQPGRFHELEDYWNESQALQRPGGHIADGWASEYSLNREKYGGHDAWAQSFEQQYGANGWASEFEQEKFQLASAERIGGNMMNLSAMEQTRKLANTLAENNDPKFQNSKFLQFVSKMSRGELIIDDNQVKPNSLSPTDNWASEYQQQYSGGLPWADEFVSNQTNRWADEFAEEKRHVSDDPWVNEFSKLHMQDWVEEFGQQVGEGASGEVDNWANAYDEYVNEQVAAKGKTDASKGIYVFSDMNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVMKNPENAEGWRLLGIAHAENDDDQQVFYALDVEFLAYKTNLAIAAMKRALDVDPTNLEVLLALGVSHTNELEQAAALRYLYGWLQHHPKYGTLAKPELSDSLYYADVSIMLFLVLNLDLDVVAYSEACVVWVEGASVNVRWVGAVHVVQPRALELGFRLGPADGSPLTFVQEHKVAGLFNEAAQMFPDDVDVHIVLGVLYNLSREFDKAIASFQTALKLKPQDYSLWNKLGATQANSIQSADAILAYQQALDLKPNYVRAWANMGISYANQGLYEESIKYYVRSLSMNPKADNAWQYLRISLSCASRNDMLEACDSRNLDALQKEFPL 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4423368 4437178 + ClCG10G003580.1 Cla10g00338 281997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00338 828 MobiDBLite consensus disorder prediction 33 47 - -
Cla10g00338 828 ProSiteProfiles TPR repeat region circular profile. 758 790 - -
Cla10g00338 828 MobiDBLite consensus disorder prediction 33 84 - -
Cla10g00338 828 ProSiteProfiles TPR repeat profile. 690 723 IPR019734 GO:0005515
Cla10g00338 828 Pfam Tetratricopeptide repeat 759 790 IPR001440 GO:0005515
Cla10g00338 828 ProSiteProfiles TPR repeat profile. 758 791 IPR019734 GO:0005515
Cla10g00338 828 SMART tpr_5 690 723 IPR019734 GO:0005515
Cla10g00338 828 SMART tpr_5 724 757 IPR019734 GO:0005515
Cla10g00338 828 SMART tpr_5 758 791 IPR019734 GO:0005515
Cla10g00338 828 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 674 828 IPR024111 -
Cla10g00338 828 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 609 IPR024111 -
Cla10g00338 828 PANTHER BNAC09G53570D PROTEIN 674 828 - -
Cla10g00338 828 PANTHER BNAC09G53570D PROTEIN 1 609 - -
Cla10g00338 828 ProSiteProfiles TPR repeat profile. 724 757 IPR019734 GO:0005515
Cla10g00338 828 Gene3D Tetratricopeptide repeat domain 458 593 IPR011990 GO:0005515
Cla10g00338 828 Pfam Tetratricopeptide repeat 678 723 - -
Cla10g00338 828 Gene3D Tetratricopeptide repeat domain 637 828 IPR011990 GO:0005515
Cla10g00338 828 SUPERFAMILY TPR-like 459 828 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00338 K13342 PEX5, PXR1; peroxin-5 - csv:101209718 1299.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g800 . . . . Bpe09g00092 . . Bma13g01149 Cmo16g01055 . . . . . . . . . . . . . . . Cla10g00338 Cam10g0351 Cec10g0364 Cco10g0359 Clacu10g0352 Cmu10g1188 Cre10g0599 . . Cone14ag1279 Cone15ag1306 . Csa03g00358 . Cme06g02675 Blo07g00850 . Bda05g00656 Bda12g00995 . Bpe03g00732 . . Sed08g2850 . . . . . . Cpe14g00832 . Bhi11g00375 Tan01g1931 Cmetu06g1763 . Hepe06g1219 Mch10g1459 . . . . . . . . . . Chy06g01965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004195 3 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00338 Cla_Chr10 FPKM 43.67178 42.462524 8.553468 8.439045 109.439941 130.803391 105.911064 13.050435 11.092408 10.653329