Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00339 ATGCTTATGGACCCTTCTTTCAATTCCTCTCACCAAGAACAACAACAAGAACAACAAGAACAAGATCAAGAAATTACCACTTCCAATCATTCTTTCCAAATGCGTCAATTACTAATCCGTTGTGCTCATTTCATTTCTCAATCTGATTTCCTTTCAGCTCATCATCTTCTTTCAATTCTCTCTTCAAATTCCTCTCCTTATGGTGATTCCACTGAAAGATTACTTCATTACTTCTCTTCTTCCCTTTCTCATCGCCTCCCTTCAAATTCTTCTTTTGTTCATCATCATCATCATCATCATCATCAAGATAATGATGATGAGAGCAGGATTCAATCTTGTTACTTATCATTGAATCAAATCACACCCTTTATTAGATTTACTCATTTGACTGCAAATCAAGCCATTTTGGAAGGTATTGAAGAAAGTGGGATGATTCATGTTTTGGATTTTGATATTATGCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGATCGTTTTCCTTCTCCTATGCTTCGTATTACTGCTACTGGTCTTGATCTTAACTTCCTTCATAAGACTGGTGATAGGCTTTCTAAATTTGCTCAATCACTTGGTTTGAGGTTTCAGTTTCATCCTCTTCTTCTTCTTCATGATCGCGATCATCACCGTGTTATCCCCGCCGCTCTCACGCTCTTCCCCGACGAAGCTCTCGCCGTCAACTGTGTTCTCTACTTGCACAGGCTAATGAAGGAGGATGTTCGAGTATTGCTTCATAAAATCAAGGCTTTGAATCCAAAAGTGGTGACTATAGCTGAAAAGGAAGCAAATTTCAACCACCCATTATTCATGCAAAGATTTATAGAGGCATTGAATCATTACTCTTTAATATTTGATTCATTAGAAGCAACTTTGCCTCCAAATAGTAGGGAGAGATTGGCAGTGGAGCAAGTTTGGTTTGGGAGGGAAATAGACGACGTCGTTTCAGGAGAAGGGAATAAGAAGAGAAGGCAACACTATGAAAGGTATGAATCATGGGAAATAATGCTTAAAAGTTTGGGATTTTCTAATATTCCTTTAAGCCCTTTTGCTCTTTCACAAGCCAAACTTCTTCTTAGACTTCATTACCCTTCTGAAGGTTACCATCTTCAAATCCTTCATGATTCCCTTTTCCTTGGTTGGCAAAATCAACCCCTTTTTTCAGTCTCTTCATGGCATTGA 1206 38.64 MLMDPSFNSSHQEQQQEQQEQDQEITTSNHSFQMRQLLIRCAHFISQSDFLSAHHLLSILSSNSSPYGDSTERLLHYFSSSLSHRLPSNSSFVHHHHHHHHQDNDDESRIQSCYLSLNQITPFIRFTHLTANQAILEGIEESGMIHVLDFDIMHGVQWPPLMQALADRFPSPMLRITATGLDLNFLHKTGDRLSKFAQSLGLRFQFHPLLLLHDRDHHRVIPAALTLFPDEALAVNCVLYLHRLMKEDVRVLLHKIKALNPKVVTIAEKEANFNHPLFMQRFIEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREIDDVVSGEGNKKRRQHYERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQILHDSLFLGWQNQPLFSVSSWH 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4449962 4451615 - ClCG10G003590.2 Cla10g00339 281998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00339 401 ProSiteProfiles GRAS family profile. 25 401 IPR005202 -
Cla10g00339 401 PANTHER SCARECROW-LIKE PROTEIN 18 11 401 IPR030017 GO:0005634|GO:0010223
Cla10g00339 401 MobiDBLite consensus disorder prediction 1 26 - -
Cla10g00339 401 Pfam GRAS domain family 34 400 IPR005202 -
Cla10g00339 401 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 401 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00339 Cla-Chr10:4449962 Cla11g00724 Cla-Chr11:10282118 1.75E-75 dispersed
Cla10g00339 Cla-Chr10:4449962 Cla01g01901 Cla-Chr1:33774464 1.50E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61832 PF03514 GRAS 2.20E-118 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00339 - - csv:101213853 678.322