Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00340 ATGAAAGCTACCAAATCCTTTGGGGAGTATCTCGATATGCCTCTTCAAACTGGGTGTTACAAGTACAAAGCTTTCAACAGAGGCGGCGTTTATTCTGCCGCCGCAGCGCCAGCTGAGGCTCCGACGGCTTCTACAACAGAGTCATTTTCTTCTTCTTCTTCATTTTTGTACTCGACGACCAGTAAGCGGCGTTGGTGGAATAAGAATTCGACTAAAACTTTCGGGGTTGGGGTTTGTTCAGAGAAGGTTCATGAATTTGAGGTTCCGGGGAGGAGTTGTTCAAATGGGTCATCGAGAATTGCTTGTTTGTATACGCAGCAGGGGAAGAAAGGGGTTAATCAAGACGCCATGATTGTGCAGGAGAGCATTTTGTGGACTGAAGGTTCATGGCAGTTACAAGCAGATTTTTTAGATCCTGTAGGAACTAATAGATTGAATTTCAGTTCAAGAAGAGATACAGTATTTTGTGGGGTATTTGATGGACATGGTCCTTTTGGACATATGGTTGCAAAAAAAGTTCGTGATACTCTCCCTCTAATCCTGTGTACACAATGGACATCTAAATCAAATCAAGATCAAAGCAACCTCTTTAAGACAAGACATTCCCGAAGTTCGAATTCTGAAGCTTCTGTTGCCCTAGATGGAGATGAAGATTCTTACAAGTCATTGGAGGCCGAAGATAATGAAAAATTCCCCAAAATGTTTCTACCACTCAAAGTATCTTTACTGAAGTCCTTCAAATTAATGGATAAAGAGTTGAAACTGCATCCCAAAATTGATTGTTTTTGCAGTGGATCGACGGCCGTGACTCTAATAAAGCAGGGTCAGAACCTTGTACTTGGAAATGTTGGTGACTCAAGAGCGGTGCTGGCTACGATAGACGAAGATAACTCTTTGATTCCAGTTCAATTAACGGTGGACTTGAAACCTGATCTTCCTGGTGAAGCTGCTAGGATCCAGCAATGCAAAGGAAGGGTCTTTGCTTTGCAGGATGAGCCCGAAGTTGCACGAGTATGGTTGCCAAATAACGATTCACCTGGTTTGGCGATGGCGAGAGCTTTTGGAGACTTTTGTCTGAAGGATTTCGGTCTTATTTCTGTTCCCGATGTTTATTATCGTCGCCTTACTGCGAGAGATCAGTTTGTAATTCTTGCCACTGATGGGTTTTCTATTTGTATGGAAGAAGGGTGCGTTTTCTTCTCGCTAGGTAAGTTCCCCAGGATATCGATATCCTCGGCATCGAGCTAG 1248 43.35 MKATKSFGEYLDMPLQTGCYKYKAFNRGGVYSAAAAPAEAPTASTTESFSSSSSFLYSTTSKRRWWNKNSTKTFGVGVCSEKVHEFEVPGRSCSNGSSRIACLYTQQGKKGVNQDAMIVQESILWTEGSWQLQADFLDPVGTNRLNFSSRRDTVFCGVFDGHGPFGHMVAKKVRDTLPLILCTQWTSKSNQDQSNLFKTRHSRSSNSEASVALDGDEDSYKSLEAEDNEKFPKMFLPLKVSLLKSFKLMDKELKLHPKIDCFCSGSTAVTLIKQGQNLVLGNVGDSRAVLATIDEDNSLIPVQLTVDLKPDLPGEAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRRLTARDQFVILATDGFSICMEEGCVFFSLGKFPRISISSASS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4469979 4482457 - ClCG10G003600.1 Cla10g00340 281999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00340 415 Pfam Protein phosphatase 2C 237 395 IPR001932 -
Cla10g00340 415 PANTHER ALPHABET, ISOFORM E-RELATED 146 388 - -
Cla10g00340 415 PANTHER ALPHABET, ISOFORM E-RELATED 62 124 - -
Cla10g00340 415 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 146 388 - -
Cla10g00340 415 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 62 124 - -
Cla10g00340 415 ProSiteProfiles PPM-type phosphatase domain profile. 100 415 IPR001932 -
Cla10g00340 415 CDD PP2Cc 99 390 IPR001932 -
Cla10g00340 415 Gene3D - 97 401 IPR036457 -
Cla10g00340 415 SUPERFAMILY PP2C-like 95 390 IPR036457 -
Cla10g00340 415 SMART PP2C_4 89 408 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00340 Cla-Chr10:4469979 Cla11g00927 Cla-Chr11:16035128 1.05E-123 dispersed
Cla10g00340 Cla-Chr10:4469979 Cla02g00118 Cla-Chr2:1360519 4.63E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00340 - - cmo:103490977 595.504