Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00343 ATGAAGGCTGAACGAGCTTCTCATCATAATCCCACGAGAGCAGTTTGCAGAAAGTTTCTTCAAGTAATCGTAATAAGGAGTAGCAGCAAGGGTAAAAATTCTGACAACTCGAAAGACCTCTTTTATCGGCCCTGGTTTCGGGCTCATTCAATTCCTCGAACTCGGCGTTTAGCTTCTGGTTGGTGGGAAAAAAAGAACTGGGAAGAGCTCGGCGACGATACTCAGCTCTTTTTCCCTCTTCTCTTCTTCTTCTACCTTCTTCCCCTTTTCAGAACAACCCCTTTTCCCCATTTTGTTTTTCCCTTTTCCCTGTTCATTCCCCCCTGCTTTTCGTTTACTGTTTCACAGACTTCCCCCTTTGGCAGAGCAAGAAACTTCAAGAAATTTCGTTTCTGGGGTGGTGAACTGGCTTGGGTGGGAGAAGAAGTTGTGATGATCCATATGGACGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAGCGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGACATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCGCAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAACTATGGGGCAAGGTTGAGGATCCAACATCTGAATATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGCTTGCCTTCAGATTATTGGAATTTTATCCCTAAGGATGAACAACAGGAAGAAAGTTATTGTAGACCAAACAGGAAAATCCTAACGCATGCTCAGGTTCATTATTTGTTGAAAGACATTGACCCAAAGTTTCTCAAAAAGTTTGTGCCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCAAACAGTCATCGTGTGACTGAAATGACACATTCATTTTCAAATGGACAGCGATTGATCTTTCTTAGCCCAGAGAAGTTACAGAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCTACTAGCTCATATGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCATGTCATGTTGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGCACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTTTGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCAGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCCGAGTGGAAGTTAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCGCTTTACATCAGTTGTTGCCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGCGCTTGGACTGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTCCTTATTGAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAAGGCAAGACCCTTGACTACTTGCACGATGCTCAAGGGGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAGGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATGCACATAAAGATATCCTTACTGAAGATGACGAAGATAATCAACACGTGTTGTCTATTGCTGTGGATCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTTCGTGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTAAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTTACGTGTTCTGCATGGAACAGCCAGAAGATGCCTCGTTATACTCAGAAGGATGGTCTTCCTGACCGTACGTCGTCTTTCATACCATATGCTGTGGTTGAAAGTTCCTTTCTCTCAGGGCTTAATCCGTTTGAATGTTTTGCTCATTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACATTCCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGCATCTCTAATGAATTGGATAGCGAGAACAATAATAGAGATCATGATATAGGTGGTCATCCTGTTGGGTCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTTCTAAACGAAGTTATGGATTTGAGTATGGAGCATTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAATGTCATGATAATCTTCTCCCCACAGCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGAAATTTTGAAGAAAAGAAGGTTGAAGATGAATTCTGTCATCCATTCCCTTAATATGCGGTGTGACTCTGTGAGACAAGAAGGAAGAATGAATTTGCCCTCTTTGCAAATAATAACCCAGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGAGTAGACATTGCATGGAATGACCGACCGAAGGTACCAAAACTTCATTGTAATCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTGTAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATATGGAATAGATTCTGGATGGAAGTACTTTCTCAATAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTGTTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCGAGTCCTGGTGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCGCTGGGAACCGGGGGACAGTTTGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATCGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGTGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAACGATATTCAGAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTACTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATGAAAAGATTGGTGTTGGAGCACAGGACATAAAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAAGTGTGTTTTAGGTGCTTTGGAGATCATTGCCCCGCATAGAGTAAAGGGT 4722 40.55 MKAERASHHNPTRAVCRKFLQVIVIRSSSKGKNSDNSKDLFYRPWFRAHSIPRTRRLASGWWEKKNWEELGDDTQLFFPLLFFFYLLPLFRTTPFPHFVFPFSLFIPPCFSFTVSQTSPFGRARNFKKFRFWGGELAWVGEEVVMIHMDDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMTHSFSNGQRLIFLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSISNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLHCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKG 1574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4511768 4528755 - ClCG10G003630.1 Cla10g00343 282002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00343 1574 Pfam RNA polymerase Rpb1, domain 2 441 599 IPR000722 GO:0003677|GO:0003899|GO:0006351
Cla10g00343 1574 Pfam RNA polymerase Rpb1, domain 4 815 878 IPR007083 GO:0003677|GO:0003899|GO:0006351
Cla10g00343 1574 CDD RNAP_IV_RPD1_N 171 975 IPR040403 -
Cla10g00343 1574 PANTHER DNA-DIRECTED RNA POLYMERASE 148 1474 IPR045867 GO:0003899|GO:0006351
Cla10g00343 1574 SMART rpolaneu7 373 628 IPR006592 GO:0003677|GO:0003899|GO:0006351
Cla10g00343 1574 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 159 1400 - -
Cla10g00343 1574 Gene3D RNA polymerase ii 474 526 - -
Cla10g00343 1574 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 148 1474 - -
Cla10g00343 1574 Gene3D RNA polymerase Rpb1, domain 3 608 756 IPR042102 -
Cla10g00343 1574 Gene3D - 436 607 - -
Cla10g00343 1574 Gene3D RNA polymerase II, clamp domain 159 258 IPR044893 -
Cla10g00343 1574 Pfam Protein of unknown function (DUF3223) 1488 1560 - -
Cla10g00343 1574 Gene3D - 774 928 IPR038120 -
Cla10g00343 1574 Gene3D - 1471 1562 - -
Cla10g00343 1574 Pfam RNA polymerase Rpb1, domain 3 604 751 IPR007066 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00343 K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] - csv:101214578 2677.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00733 Cla-Chr1:8537259 Cla10g00343 Cla-Chr10:4511768 4.94E-11 dispersed
Cla05g02041 Cla-Chr5:32129895 Cla10g00343 Cla-Chr10:4511768 1.65E-10 dispersed
Cla06g01592 Cla-Chr6:29450031 Cla10g00343 Cla-Chr10:4511768 2.76E-07 dispersed
Cla10g00047 Cla-Chr10:530522 Cla10g00343 Cla-Chr10:4511768 1.66E-47 dispersed
Cla10g00343 Cla-Chr10:4511768 Cla10g01640 Cla-Chr10:32022491 1.48E-10 dispersed
Cla10g00343 Cla-Chr10:4511768 Cla05g02076 Cla-Chr5:32411834 3.96E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00343 Cla_Chr10 FPKM 1.786207 3.377713 3.083099 3.136544 0.0 1.781121 2.15987 6.514735 4.893406 7.872297