Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00348 ATGGCCTCCACCACCTCCTCCAACAGACATGATCACTACAAAGGAATCCGCTGCCGCAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACCCGAATATGGCTCGGTACCTACCCTACGCCGGAGATGGCTGCTGCTGCCTACGATGTCGCCGCACTCGCACTCAAGGGTTGCAATGCTGTTCTCAACTTCCCGGAATTGATTGCCTCCTACCCGGTTCCGGCTTCCTCGTCCCCAGCCGATATCCGATTTTCTGCCGCTGCTGCTGCCGCCTTGAAAAAAGTTGATGATCAAGGACAAAACACTGACCAAAGCTTTCACCACCAGTCTCTGCCAACCAATGAGTTTGTCGACGAAGAGGCGCTGTTCGGAATGCCGAATCTGCTTGTTGACATGGCCGAGGGAATGCTGTTGTCCCCACCACGAATGACCTCGTCGCCGTCCCGACATGACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG 507 54.64 MASTTSSNRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPELIASYPVPASSSPADIRFSAAAAAALKKVDDQGQNTDQSFHHQSLPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMTSSPSRHDSWNSSGDGNLWSYH 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4644933 4645439 - ClCG10G003710.1 Cla10g00348 282007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00348 168 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700|GO:0006355
Cla10g00348 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 6 167 - -
Cla10g00348 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 167 - -
Cla10g00348 168 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Cla10g00348 168 Pfam AP2 domain 12 60 IPR001471 GO:0003700|GO:0006355
Cla10g00348 168 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Cla10g00348 168 CDD AP2 12 70 IPR001471 GO:0003700|GO:0006355
Cla10g00348 168 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00847 Cla-Chr5:8378255 Cla10g00348 Cla-Chr10:4644933 8.19E-49 dispersed
Cla10g00348 Cla-Chr10:4644933 Cla10g01830 Cla-Chr10:34267959 3.19E-47 dispersed
Cla01g00301 Cla-Chr1:3166749 Cla10g00348 Cla-Chr10:4644933 2.77E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61833 PF00847 AP2 5.50E-11 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00348 - - csv:101202953 282.337