Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00352 ATGTTGGCTGGGTGTTCTAGTTCAACATTGCTCTCGCCAAGGAATCGATTGAGAAGTGAAGCACAGCCACCATTTCCAGCTTGCCATTTGCAGTTGCCCACTTCAATGAGCACACAGAGATTGGATTTGCCCTGCAGCTTTTCCCGTTCTAAAGACACCTCTGCCACTGCCCGATCCCCGTCAATCCGCCCGGTTGCGCTCTCCGTCGAGAAGCAGAACATCAGGCTCCCGCCGTTATCCGCCACCAACCAGCAGATCAAGCAAGAGTTTTGGAATGGGAAAGGTAAGAACTTGAAGAGAATTGCAGAGCAAGTTGGGTTTGATGATGATGATTCTTCCATTAACAGCGCCAAGAGGAAGAGAGAGTGCAGAGACGACGCCGGAGATGGACTAATTCTAAGCCAATTCGGCGGTGGGGGTGGGAGTTTCTGGTTTCATCAGCCTGATGGGGATGAAGAAGGAATCTGTTTTCTTCCTGGAAGTGAAGTAATTTCTTCACCATCGCCGTTTTTTTCAGAGATCGCCGACTTCGGAGAAGGAAATGATGGAGAAAGCAGCCATGTAAAGGCTCAGGAAGGCTCCGGTTCGGGTTCAGGGTCGAGTTCATCATCAGAAAGTGAGAGATTTGCATTAAGAAGCAGAGTAACAACAGAGAATGTTTCAGCAGCAGCAACAACAGTGCCAGAAATTGGGAATGGAAGCTCAAGAAATCCTTCATATCATCACCATCAAGGTTCTGGTTTAGAGAATGAAAGGGAAGAAGAAGAAGGGTTTGAGCTGATAAGTCTTCTAATGGCATGTGTAGAAGCAATTGGATCAAAGAACATTGGTTTGATTAACCATTTGATAGATAAACTTGGGAGTCAAGCTTCACCAAGAGGCTCATCACCAATTACACGTTTGATTGCATATTACACAGAGGCTTTAGCAGTTAGAGTGAGCAGAGTTTGGCCACAGGTTTTTCACATAACAACACCAAGGGAATACGATCGGATGGAGGACGATACGGGGACAGCACTACGGCTGCTAAACGAGGTGAGCCCGATCCCGAAATTCATCCACTTCACAGCAAATGAGATGTTGCTAAGAGCATTTGAAGGGAAAGACAGGGTTCACATCATAGACTTTGACATAAAGCAAGGGCTGCAATGGCCAAGCTTGTTCCAAAGTTTGGCATCTAGAACAAACCCTCCAAGTCATGTGCGAATCACTGGGATCGGTGAGTCAAAGCAGGAATTGAACGAAACGGGAGATAGGCTAGCAGGGTTCGCCGAGGCATTGAGGCTGCCGTTCGAGTTTCATGCCGTGGTGGACCGGTTGGAGGATGTGAGACTGTGGATGCTTCATGTCAAGGAGCAAGAAAGTGTAGGAGTGAATTGCATGCTCCAACTTCACAAGACACTGTACGATGGCAATGGAGGAGCATTGAGGGACTTTTTGGGGCTCATAAGAAGCACAAACCCAAGTATTGTTGTCATGGCTGAGCAAGAAGCTGAGCACAACGAACCGAGGTTAGAGAGTCGAGTTACAGCCACATTGAAGTACTACGCTGCCATATTCGATTCCCTCGATGCTAGTCTTCCACCCGATAGCTCAGCCAGGTTGAAAATTGAGGACATGTTTGGGAGGGAGATAAGGAACATGATAGCATGTGAAGGAAGGGAGAGATATGAAAGACATGTTGGATTTAAGAAATGGAAGAAGGATATGGAGCAGCAAGGAGGTCTGCAATGCGTCGGGATTTGCGACGATCGAGAGCTTCTTCAGACTCAATTCCTCTTGAAAATGTACTCATCAGCTCATGGATTCAAGGTCACAAAGATTGAAGAAGAAGAAGGAGCAGCTCAAGCAATTTGCCTAACTTGGGAAGATCAGCCACTTTACTCTTCTACATTTGATTTGTTGAAATTCTTTAATTCTTTTGTGTAA 1929 46.45 MLAGCSSSTLLSPRNRLRSEAQPPFPACHLQLPTSMSTQRLDLPCSFSRSKDTSATARSPSIRPVALSVEKQNIRLPPLSATNQQIKQEFWNGKGKNLKRIAEQVGFDDDDSSINSAKRKRECRDDAGDGLILSQFGGGGGSFWFHQPDGDEEGICFLPGSEVISSPSPFFSEIADFGEGNDGESSHVKAQEGSGSGSGSSSSSESERFALRSRVTTENVSAAATTVPEIGNGSSRNPSYHHHQGSGLENEREEEEGFELISLLMACVEAIGSKNIGLINHLIDKLGSQASPRGSSPITRLIAYYTEALAVRVSRVWPQVFHITTPREYDRMEDDTGTALRLLNEVSPIPKFIHFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGESKQELNETGDRLAGFAEALRLPFEFHAVVDRLEDVRLWMLHVKEQESVGVNCMLQLHKTLYDGNGGALRDFLGLIRSTNPSIVVMAEQEAEHNEPRLESRVTATLKYYAAIFDSLDASLPPDSSARLKIEDMFGREIRNMIACEGRERYERHVGFKKWKKDMEQQGGLQCVGICDDRELLQTQFLLKMYSSAHGFKVTKIEEEEGAAQAICLTWEDQPLYSSTFDLLKFFNSFV 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4708102 4710315 + ClCG10G003760.1 Cla10g00352 282011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00352 642 MobiDBLite consensus disorder prediction 169 253 - -
Cla10g00352 642 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 629 IPR005202 -
Cla10g00352 642 PANTHER SCARECROW-LIKE PROTEIN 28 6 629 IPR030027 -
Cla10g00352 642 MobiDBLite consensus disorder prediction 1 16 - -
Cla10g00352 642 MobiDBLite consensus disorder prediction 1 22 - -
Cla10g00352 642 Pfam GRAS domain family 260 631 IPR005202 -
Cla10g00352 642 ProSiteProfiles GRAS family profile. 251 634 IPR005202 -
Cla10g00352 642 MobiDBLite consensus disorder prediction 187 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00352 Cla-Chr10:4708102 Cla11g00724 Cla-Chr11:10282118 7.77E-78 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61834 PF03514 GRAS 1.50E-118 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00352 - - csv:101209060 1106.28