Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00353 ATGGCGATGCCTTCGCGTGAAGCAATTGATACTTTCATCAGCGTCACCGGAGCCTCCGAAGCCATCGCCGTTCAGAGCCTTGAGGCACATGGTGCTGATCTCAATGCTGCTGTGAATGCATATTTCAATGAAGGAGATAGAAGTTCGTCTGTGAACGCACGGCAAACCTCTGTTTCTGGTGAATATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAAGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGATAATGAATCCATTTTCATTACTTGATCAAAATCTCCGCCAGGGGTTCTTTGACCGCAGCTCTGATTTTACAAGTTCTGCTCCTGTTGTTACTCATCCAAGAGAGTTGAGGGAGATTCCCATAGAATTTAGAGATGGTAATCGGCCGTCTGGCCAAGCTGGCCATGAGCCAACAATTGAGGATGTCACTGGGACTCTAGATGCCCCTGGTCCAGAGGTTCATGGGACTGTACTAATTGATGATACAGAAGACGAAGAACCTCCAGTTACTTCTATAGCACACGCACCAGATTTAGAGCATCAGGCTGTTGCGAGTAACATATCTCGTGGCAGAAATGCTATAACTGGTGCATTTGATAGTGATGAGTTTCAGGACAGAAATGATATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAGAAGGATGTTGGGCAAGCTTATCCAAATGATCCCATAACTTCGCACACTGATTTAAGCAACCTTAGAACTCAAGAACATCTTTCTCACTTGAATAATTTTGAATTTTCGCCTGCAGCTTTGTCTATCAAGCCAGAGGAAGATATCCCTCAGCGAGGGGAGAACATTGGAGGATCAAAAATAGAAGCTTCTAAGTTAACTGAGGTGGACGTGGAGCTGAGGAAATCTGATGATGTTATACCGGAAAAATTCAGGATGGAAACAGGAAGCACATCTGCTCAAGACGAAGTTGAAGACCTAGAGGAAGATAATTTAATAAGGCATCGGTCTAAACGCAAGTCCACTGGCTATGTGGAGCCTGCAAAGGGGGTTGAAGTAGATGTAAACCTTGCATCTAGTCCCAAGCAATCCGATACTAGTAACAATCCACAGCACAATGGGAATATGTTTCCTTCTGATGAGTGGGGCGGAATTTCTTCAGAGGAGCATGACGAAGCAGTCATGCTTGAGGCTGCTATGTTTGGTGGAGGTTCTGAAGGAAGTTCATACCATTTTCCATCTGCACCCCATGAATTCATGAGAAATCAAGGTTCATACATGCAGCCAGCTCCTCGTCCTCCTTCTCCCTCTTTAGTAGCTCAGCGTTTGATAAGGGAACAACAGGATGATGAGTATCTCGCAGCCTTACAAGCTGACAGAGAAAAAGAACTAAAGGCTATGGAAGAAGCTGCAGCTGTTCGTGAAAAAGAAAGACAAAGAGAGGAAGAATCCCGTCAGAAATTGGATGCTGAGAAGGAACTTGAAAGACACTTGGCAGAAATAGAAGCTTCTCTTCCAAGTGAACCAAGAACAGATGATGAGAATGCTGTCACACTATTAGTGCGCATGCCAGATGGCAGTCGCCGCGGTCGTCGATTTCTCAAAACTGATAAGTTACAGTGTCTCTTGCACTTCATTGATATTGGTAGAGTTGTCAAGCCTGGCTCCTACAGATTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGATGGGGAGGGTTCATTAACGTTGAATGAACTTGGACTCAACAGCAAACAAGAAGCTTTGTATCTGGAGTTGATTTAA 1791 44.56 MAMPSREAIDTFISVTGASEAIAVQSLEAHGADLNAAVNAYFNEGDRSSSVNARQTSVSGEYDFMDIDDPVEVEPQGPPRSLLSTAREIMNPFSLLDQNLRQGFFDRSSDFTSSAPVVTHPRELREIPIEFRDGNRPSGQAGHEPTIEDVTGTLDAPGPEVHGTVLIDDTEDEEPPVTSIAHAPDLEHQAVASNISRGRNAITGAFDSDEFQDRNDIEEEMIRAAIEASKKDVGQAYPNDPITSHTDLSNLRTQEHLSHLNNFEFSPAALSIKPEEDIPQRGENIGGSKIEASKLTEVDVELRKSDDVIPEKFRMETGSTSAQDEVEDLEEDNLIRHRSKRKSTGYVEPAKGVEVDVNLASSPKQSDTSNNPQHNGNMFPSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYHFPSAPHEFMRNQGSYMQPAPRPPSPSLVAQRLIREQQDDEYLAALQADREKELKAMEEAAAVREKERQREEESRQKLDAEKELERHLAEIEASLPSEPRTDDENAVTLLVRMPDGSRRGRRFLKTDKLQCLLHFIDIGRVVKPGSYRLVRPYPRKAFGDGEGSLTLNELGLNSKQEALYLELI 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4711889 4717838 - ClCG10G003770.2 Cla10g00353 282012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00353 596 Coils Coil 455 502 - -
Cla10g00353 596 ProSiteProfiles UBX domain profile. 514 592 IPR001012 GO:0005515
Cla10g00353 596 Gene3D - 5 45 - -
Cla10g00353 596 CDD UBX 520 594 - -
Cla10g00353 596 PANTHER OS09G0525600 PROTEIN 1 235 - -
Cla10g00353 596 PANTHER OS09G0525600 PROTEIN 322 596 - -
Cla10g00353 596 SMART ubx_3 511 595 IPR001012 GO:0005515
Cla10g00353 596 Pfam UBX domain 515 594 IPR001012 GO:0005515
Cla10g00353 596 PANTHER FAS-ASSOCIATED PROTEIN 1 235 - -
Cla10g00353 596 PANTHER FAS-ASSOCIATED PROTEIN 322 596 - -
Cla10g00353 596 MobiDBLite consensus disorder prediction 471 494 - -
Cla10g00353 596 SUPERFAMILY Ubiquitin-like 477 586 IPR029071 -
Cla10g00353 596 CDD UBA_Ubx1_like 6 42 - -
Cla10g00353 596 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Cla10g00353 596 Pfam UBA-like domain 6 47 - -
Cla10g00353 596 Gene3D - 515 595 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00353 - - - csv:101208817 1019.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00157 Cla-Chr1:1594124 Cla10g00353 Cla-Chr10:4711889 1.65E-13 dispersed
Cla01g01314 Cla-Chr1:26471722 Cla10g00353 Cla-Chr10:4711889 2.17E-08 dispersed
Cla05g00196 Cla-Chr5:1761386 Cla10g00353 Cla-Chr10:4711889 1.61E-24 dispersed
Cla08g00442 Cla-Chr8:13511312 Cla10g00353 Cla-Chr10:4711889 7.12E-08 dispersed
Cla10g00353 Cla-Chr10:4711889 Cla10g00355 Cla-Chr10:4724527 9.14E-27 dispersed
Cla10g00353 Cla-Chr10:4711889 Cla10g00354 Cla-Chr10:4718468 4.26E-135 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g369 . . . . . . . . Cmo06g00724 Cmo16g01046 . . . . . . . . . . . . . . Cla10g00353 . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01003 Car06g00629 . Cpe08g00807 . . . . . . . . . . . . . . . . . Chy06g01938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00353 Cla_Chr10 FPKM 4.170467 5.734782 8.770297 9.97239 12.530117 10.728741 12.726888 11.157366 11.529158 12.71279