Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00363 ATGGCCTCCGTGTTTGATTATTCAATTGGATGGTTTCGGGCCTTAGCTTTCCACAGAACACCAGGGCTTCCGCTTTCAATTGGTTACTTCAAACCTATTATCTCAACTGTTGAAATATCCTTGCCAGCAGTGGAAGGCATGGCAGCTCCAGCAACAGCAGACGTTTGTGATGCAAATGCAGCACATGTCACAAACGGAGATCTCCGAGTACTGCAACTGGCATTTGGGATTTACGGGCAACGGCGAGCGTTTTCGGGACCGATAGTGACGGTCAAGGTATTTGAAGACAATGTTTTGGTGAGACAGCTTCTTGAAACCAAAGGTGAGGGGAGGGTTCTGGTGATAGATGGGAATGGAAGCAGAAGATGTGCATTGTTGGGAGGTAATCTTGGGCAGTTGGCTCAAAACAATGGGTGGGCTGGGATTGTTGTAAATGGTTGCATAAGAGATGTTGATGAGATCAATAATTGTGATATTGGTGTGAGAGCATTAGGGACTAATCCATTGAAGTCAAACAAGAAAGGGATGGGAGAAAAGCATGTGGTGGTTCAAATTGGTGGCACTCTGATTCATGAAGGAGAGTGGTTATATGCTGATAATGATGGCATTTTGGTGTCCAAATTTGAGTTGTCTGTTTGA 639 44.91 MASVFDYSIGWFRALAFHRTPGLPLSIGYFKPIISTVEISLPAVEGMAAPATADVCDANAAHVTNGDLRVLQLAFGIYGQRRAFSGPIVTVKVFEDNVLVRQLLETKGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGTNPLKSNKKGMGEKHVVVQIGGTLIHEGEWLYADNDGILVSKFELSV 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4850370 4853065 - ClCG10G003870.2 Cla10g00363 282022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00363 212 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED 47 212 - -
Cla10g00363 212 TIGRFAM NOT-MenG: RraA family 52 206 IPR010203 GO:0008428|GO:0051252
Cla10g00363 212 Pfam Aldolase/RraA 52 205 IPR005493 -
Cla10g00363 212 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 47 212 - -
Cla10g00363 212 CDD RraA_family 53 206 IPR005493 -
Cla10g00363 212 SUPERFAMILY RraA-like 51 210 IPR036704 -
Cla10g00363 212 Gene3D - 47 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00363 - - - csv:101207435 310.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01018 Cla-Chr3:19414202 Cla10g00363 Cla-Chr10:4850370 2.71E-79 dispersed
Cla10g00363 Cla-Chr10:4850370 Cla10g00377 Cla-Chr10:5069588 3.56E-156 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g796 . . . . Bpe09g00094 . . Bma13g01147 . . . . . . . . . . . . . . . . Cla10g00363 Cam10g0375 Cec10g0394 Cco10g0388 Clacu10g0379 Cmu10g1216 Cre10g0630 . . . . . . . . . Blo10g00893 . Bda12g00993 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001787 2 3 2 2 2 2 3 2 2 2 3 2 3 2 1 3 2 1 2 2 2 4 2 2 2 2 1 5 3 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00363 Cla_Chr10 FPKM 10.732674 10.873247 12.878884 12.882816 12.448874 8.252903 11.914317 3.066459 3.28384 3.215108