Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00374 ATGATATTTTTTACATTGTTTTTCCCTTTAGGATTTGTCGTTCGAGCTCGGGATCAAGTAGTAATGGGGAGGACTGATGATAATGTTGCTATTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAGACCTGCCATGGACACTACCAGCAGTGATCATAAAACTGAAGAACTCTTTCTCAGGCCTCGAGAACATACGGTATCTGAAAACGCCGTTGCAAGAGGCGGGATCCCGGGTGCCAATTCTGGTGACCGAGCAACAGAGTTCGGTACGTTCTCGGAGCAGAAATTTCGTGGGGGACTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATCAGATCAACAGATCACTCTTTGAATTCAGAAGTAAAGTCTCCTTACTTGACAATACCACCTGGTCTCAGCCCAACTACATTGCTAGATTCACCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCAATTTTTAGCAAATGTTAGTAACAATCGGAGCTCGACGATGATGTCGGAGGCCAACAACAAAGGCAACAACAATCCGTTCGATGATAACAGTACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTATTCTCAGTGCAGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATCGAATTGGTCACCATCCTCAAGTGGGACTCTCTACATCGTACATGGAGAAGGACGATGTGGGTAAGACTGTGTTGGATGATCAAAGACCTTTTGATTCTCTGTGTGGTGGTGGTGAACATTCTTCACCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTAGTGGTTGCGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAATTGTCAGGTCAAGAAGAAAGTTGAACGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCACCAAATCGACGAGCAGCGATTGGATCTTCTGATTCCCATATCAATATGCAACCAGACATCCCTGCACAAGCAGGCCAACAGAGTGCTGAAGTTTCAGTTTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCAAGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATAGCAGTCATATTGAAACAGCTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCGAGAGTTGTCGTTCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAACCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACAGTGAGGAAGCATGTTGAGCGGGCGTCACATGACCTGAAGTCCGTGATAACCACATATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACGGGTCAAAACTCGACCGCAGCAATGCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCCTTTGGCTTTGCTGGAAGACAGCAGATGGGCACTGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGACTGGGAAATCTGACCATGGCAGCTGTTGGCCAAGCCAAGCTTCCTGTTATGCCAATGCATCCTTACTTAGCACAAGCACACCATGTTCATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2301 46.07 MIFFTLFFPLGFVVRARDQVVMGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSRPAMDTTSSDHKTEELFLRPREHTVSENAVARGGIPGANSGDRATEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFQFLANVSNNRSSTMMSEANNKGNNNPFDDNSTSFAFRPSVESGSSFILSAAASKTASATILPQSCPRIEVPVPRSENSFQSHLVEPSLSLPQNRIGHHPQVGLSTSYMEKDDVGKTVLDDQRPFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGSGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRAAIGSSDSHINMQPDIPAQAGQQSAEVSVWEDSQKGIPTGAPDWMQENLEVTSSASLGPEYGNQPNPLQAQNSSHIETAEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAMQTHVHRPGPPQPQNTIPRFERPAFGFAGRQQMGTAHGFAFGMNQPGLGNLTMAAVGQAKLPVMPMHPYLAQAHHVHEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5003276 5007536 - ClCG10G003980.1 Cla10g00374 282033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00374 766 MobiDBLite consensus disorder prediction 304 354 - -
Cla10g00374 766 SUPERFAMILY WRKY DNA-binding domain 554 622 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00374 766 Gene3D WRKY domain 549 615 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00374 766 MobiDBLite consensus disorder prediction 616 642 - -
Cla10g00374 766 SMART WRKY_cls 562 621 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00374 766 SMART WRKY_cls 347 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00374 766 Pfam WRKY DNA -binding domain 348 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00374 766 Pfam WRKY DNA -binding domain 563 619 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00374 766 ProSiteProfiles WRKY domain profile. 348 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00374 766 MobiDBLite consensus disorder prediction 624 642 - -
Cla10g00374 766 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 126 717 - -
Cla10g00374 766 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 126 717 IPR044810 GO:0003700
Cla10g00374 766 SUPERFAMILY WRKY DNA-binding domain 346 406 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00374 766 Gene3D WRKY domain 341 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00374 766 ProSiteProfiles WRKY domain profile. 557 622 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00374 766 MobiDBLite consensus disorder prediction 497 529 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01024 Cla-Chr3:19476497 Cla10g00374 Cla-Chr10:5003276 8.77E-96 dispersed
Cla05g02414 Cla-Chr5:35653311 Cla10g00374 Cla-Chr10:5003276 3.58E-81 dispersed
Cla10g00374 Cla-Chr10:5003276 Cla10g00433 Cla-Chr10:5809593 5.01E-99 dispersed
Cla10g01963 Cla-Chr10:35458588 Cla10g00374 Cla-Chr10:5003276 5.36E-15 dispersed
Cla10g00374 Cla-Chr10:5003276 Cla10g00376 Cla-Chr10:5037257 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61838 PF03106 WRKY 3.20E-24 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00374 K18835 - csv:101207853 1323.15