Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00375 ATGGCGGAAGGGGAATTTTCCGATCAGAATCGTCTTCTTAGATCCATGGAGGATCATAATGAGGAAGATCATGATTTAGAATTGCAAGATGGAAATGGGGTTCATCCAATGAGGAATAACAGTGGAAAACGAGGTGGGTTCCTGGATCTGCTTCATCATCTCAATCGAGGGAGCAGCTTCTCTGGTCGTCGTCTAAGTTATAAGCGTCTTGATATGGATAATCATAACGTTAATTTTAACCCCTCTTCTGTTAATATTGTTGGTAGAAGTCGTACGGCTTCTTCTTCTTCTTCTTCTGATCGTCACAACAATTTCAATTCGCCTTCTCTTCATGCCCCAACTGCAATAGATGGTGAAATTGACGACAATGTTGATGATACTGCCCCTCCTGAATGGGCTTTATTGCTTATTGCCTGTCTCCTTGGCCTCGCCACCGGTCTTTGTGTTGCAGCTTTTAACATTGGGGTACATGTAATCCATGAGTGGGCCTGGGCTGGCACTCCAAATGAGGGTGCTGCTTGGCTTCGCTTACAGAGAATGGCTGATACTTGGCATCGCATTCTCTTGATACCGGTAACGGGAGGTGTTATAGTGGGTATGATGCATGGTTTGCTTGAGATACTCAGCCAAATAAAACAGTCGAGTGCTTCGCAAGGGCAAGGATTTGATTTACTTTCTGGAGTCTTTCCTACGGTTAAAGCCATACAGGCAGCCATCACTTTAGGTACTGGCTGTTCATTGGGTCCTGAAGGACCTAGTGTAGATATTGGGAAATCATGTGCCAATGGGTTCTATCTTATGATGGAAAACAACAGCGAAAAGATAAAAATAGCATTTGTTGCAGCTGGTGCCGCAGCTGGAATTGCTTCAGGCTTCAATGCAGCTGTTGCTGGTAGCTTCTTTGCAATAGAAACTGTATTAAGGCCTCTACGTGCAGAAAATTCACCTCCTTTTACGACTGCAATGATCATATTGGCATCTGTTATTTCATCTACAGTCTCAAATGTTTTACTTGGCACACAGTCTGCTTTCACAGTACCTGCATATGATTTGAAATCTGCTGCTGAACTTCCGTTGTACTTGATATTGGGAATGCTTTGTGGCGCTGTGAGTGTAGCAGTTACGCGTTTAGTTGCTTGGTTTGGTAAATCATTTGAGTTCATCAAGGAAAGGTTCGGCCTTCCTCCCGTTGTCTGTCCTGCTTTAGGCGGCTTGGGAGCTGGAATAATAGCTCTCAAGTACCCAGGAATCCTTTATTGGGGTTTCACAAACGTTGAAGAAATCCTACATACTGGGAATCGTCCTTCAGCTCCAGGGATTTGGTTATTAACTCAAATAGCAGCTGCAAAAGTTGTGGCTACTGCTCTGTGCAAGGGTTCTGGGCTCGTAGGTGGCCTTTATGCACCTAGTCTAATGATTGGTGCTGCTGTTGGTGCTGTATTTGGGGGCTCAGCTGTTGAAATCATTAATATTGCAATTCCTGGAAATGCGGCTGTCGCACAGCCACAAGCATATGCACTGGTTGGAATGGCTGCTACACTGGCCTCAGTCTGTTCAGTGCCTTTAACATCCGTTCTACTTCTGTTTGAGCTGACAAAGGATTATAGGATACTCCTTCCTCTCATGGCAATTACAAAACAGACCAAGGAAATTGAATCATCTGATAAGCGGGGTCTTGCTAGAGGTTATACTTCTCTTTCACCATCTGAACGTAAAGATGGGACATCTTGGAGATATGATAATGGTGACAATGACTTGGAGCTCTCTGAGGTTGTAACTCCATCTGGCCATGAATCTAATTATGAAGATAATATTCTCGAAGACCTAAAGGTTTCTCAAGCGATGTCAAAGAACTATCTGAAGGTTTCATTGTCTATGTATTTGAAAGATGCACTAAAATACATGAGAGATAACCAGCAGAACTGTGCATTAGTGGTTGACGATGATGATTTCCTTGAGGGGATCTTGACACATGGTGACATTAAACGATATCTCTTCAAGAAGTATGGTGATGCTTTCATGGGTGACTCACTGAGTGTGGATACCTCTCTCGTGTCCTCTATTTACACTCGAGGGATTAGTTATCGTGGGCGAGAACGAGGGATTTTGACATGTTATCCTGACACTGCTCTGGCAACTGCCAAGGAACTCATGGAGGCTAAGGGTATAAAGCAGTTACCCGTTGTTAAGCGTGGTAAAGAAAGGAAAAGAAGAATTGTAGCCGTTCTTCACTATGGTTCAATTTTTAGCTGTCTCAGAGAGATCATCAATCAAAGGGAAACAGTATATCCTAGTGGAAAAGAGATAGTTGCCCAGGAGACTGTTGAAGATGGTCATTAA 2340 43.55 MAEGEFSDQNRLLRSMEDHNEEDHDLELQDGNGVHPMRNNSGKRGGFLDLLHHLNRGSSFSGRRLSYKRLDMDNHNVNFNPSSVNIVGRSRTASSSSSSDRHNNFNSPSLHAPTAIDGEIDDNVDDTAPPEWALLLIACLLGLATGLCVAAFNIGVHVIHEWAWAGTPNEGAAWLRLQRMADTWHRILLIPVTGGVIVGMMHGLLEILSQIKQSSASQGQGFDLLSGVFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYLMMENNSEKIKIAFVAAGAAAGIASGFNAAVAGSFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGTQSAFTVPAYDLKSAAELPLYLILGMLCGAVSVAVTRLVAWFGKSFEFIKERFGLPPVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGNRPSAPGIWLLTQIAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAVEIINIAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMAITKQTKEIESSDKRGLARGYTSLSPSERKDGTSWRYDNGDNDLELSEVVTPSGHESNYEDNILEDLKVSQAMSKNYLKVSLSMYLKDALKYMRDNQQNCALVVDDDDFLEGILTHGDIKRYLFKKYGDAFMGDSLSVDTSLVSSIYTRGISYRGRERGILTCYPDTALATAKELMEAKGIKQLPVVKRGKERKRRIVAVLHYGSIFSCLREIINQRETVYPSGKEIVAQETVEDGH 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5023664 5036827 + ClCG10G003990.1 Cla10g00375 282034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00375 779 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 1 770 - -
Cla10g00375 779 ProSiteProfiles CBS domain profile. 698 761 IPR000644 -
Cla10g00375 779 Gene3D Clc chloride channel 121 556 - -
Cla10g00375 779 SUPERFAMILY Clc chloride channel 130 543 IPR014743 -
Cla10g00375 779 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla10g00375 779 PRINTS Chloride channel signature 233 252 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla10g00375 779 PRINTS Chloride channel signature 462 482 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla10g00375 779 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla10g00375 779 PRINTS Chloride channel signature 285 304 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla10g00375 779 MobiDBLite consensus disorder prediction 82 122 - -
Cla10g00375 779 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 1 770 - -
Cla10g00375 779 ProSiteProfiles CBS domain profile. 615 673 IPR000644 -
Cla10g00375 779 Pfam Voltage gated chloride channel 221 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cla10g00375 779 SMART cbs_1 701 753 IPR000644 -
Cla10g00375 779 SMART cbs_1 618 666 IPR000644 -
Cla10g00375 779 MobiDBLite consensus disorder prediction 562 581 - -
Cla10g00375 779 Pfam CBS domain 701 749 IPR000644 -
Cla10g00375 779 Pfam CBS domain 611 666 IPR000644 -
Cla10g00375 779 Gene3D - 595 754 IPR046342 -
Cla10g00375 779 SUPERFAMILY CBS-domain pair 605 751 IPR046342 -
Cla10g00375 779 MobiDBLite consensus disorder prediction 82 111 - -
Cla10g00375 779 CDD Voltage_gated_ClC 145 543 - -
Cla10g00375 779 CDD CBS_pair_voltage-gated_CLC_euk_bac 615 748 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00375 - - - csv:101212254 1376.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00361 Cla-Chr10:4815467 Cla10g00375 Cla-Chr10:5023664 0 dispersed
Cla10g00373 Cla-Chr10:4989014 Cla10g00375 Cla-Chr10:5023664 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00375 Cla_Chr10 FPKM 0.031054 0.091484 0.0 0.015926 0.047504 0.119162 0.0 0.158471 0.332822 0.155025