Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g00376 | ATGGGGAGGACTGATGATAATGTTGCTATTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAGACCTGCCATGGACACTACCAGCAGTGATCATAAAACTGAAGAACTCTTTCTCAGGCCTCGAGAACATACGGTATCTGAAAACGCCGTTGCAAGAGGCGGGATCCCGGGTGCCAATTCTGGTGACCGAGCAACAGAGTTCGGTACGTTCTCGGAGCAGAAATTTCGTGGGGGACTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATCAGATCAACAGATCACTCTTTGAATTCAGAAGTAAAGTCTCCTTACTTGACAATACCACCTGGTCTCAGCCCAACTACATTGCTAGATTCACCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCAATTTTTAGCAAATGTTAGTAACAATCGGAGCTCGACGATGATGTCGGAGGCCAACAACAAAGGCAACAACAATCCGTTCGATGATAACAGTACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTATTCTCAGTGCAGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATCGAATTGGTCACCATCCTCAAGTGGGACTCTCTACATCGTACATGGAGAAGGACGATGTGGGTAAGACTGTGTTGGATGATCAAAGACCTTTTGATTCTCTGTGTGGTGGTGGTGAACATTCTTCACCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTAGTGGTTGCGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAATTGTCAGGTCAAGAAGAAAGTTGAACGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCACCAAATCGACGAGCAGCGATTGGATCTTCTGATTCCCATATCAATATGCAACCAGACATCCCTGCACAAGCAGGCCAACAGAGTGCTGAAGTTTCAGTTTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCAAGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATAGCAGTCATATTGAAACAGCTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCGAGAGTTGTCGTTCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAACCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACAGTGAGGAAGCATGTTGAGCGGGCGTCACATGACCTGAAGTCCGTGATAACCACATATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACGGGTCAAAACTCGACCGCAGCAATGCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCCTTTGGCTTTGCTGGAAGACAGCAGATGGGCACTGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGACTGGGAAATCTGACCATGGCAGCTGTTGGCCAAGCCAAGCTTCCTGTTATGCCAATGCATCCTTACTTAGCACAAGCACACCATGTTCATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA | 2238 | 46.38 | MGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSRPAMDTTSSDHKTEELFLRPREHTVSENAVARGGIPGANSGDRATEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFQFLANVSNNRSSTMMSEANNKGNNNPFDDNSTSFAFRPSVESGSSFILSAAASKTASATILPQSCPRIEVPVPRSENSFQSHLVEPSLSLPQNRIGHHPQVGLSTSYMEKDDVGKTVLDDQRPFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGSGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRAAIGSSDSHINMQPDIPAQAGQQSAEVSVWEDSQKGIPTGAPDWMQENLEVTSSASLGPEYGNQPNPLQAQNSSHIETAEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAMQTHVHRPGPPQPQNTIPRFERPAFGFAGRQQMGTAHGFAFGMNQPGLGNLTMAAVGQAKLPVMPMHPYLAQAHHVHEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM | 745 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5037257 | 5042476 | - | ClCG10G004000.1 | Cla10g00376 | 282035 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g00376 | 745 | SMART | WRKY_cls | 326 | 384 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla10g00376 | 745 | SMART | WRKY_cls | 541 | 600 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla10g00376 | 745 | MobiDBLite | consensus disorder prediction | 595 | 621 | - | - | |
Cla10g00376 | 745 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 105 | 696 | IPR044810 | GO:0003700 | |
Cla10g00376 | 745 | MobiDBLite | consensus disorder prediction | 476 | 508 | - | - | |
Cla10g00376 | 745 | SUPERFAMILY | WRKY DNA-binding domain | 325 | 385 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla10g00376 | 745 | PANTHER | WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 | 105 | 696 | - | - | |
Cla10g00376 | 745 | MobiDBLite | consensus disorder prediction | 603 | 621 | - | - | |
Cla10g00376 | 745 | ProSiteProfiles | WRKY domain profile. | 327 | 385 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla10g00376 | 745 | Pfam | WRKY DNA -binding domain | 327 | 383 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla10g00376 | 745 | Pfam | WRKY DNA -binding domain | 542 | 598 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla10g00376 | 745 | SUPERFAMILY | WRKY DNA-binding domain | 533 | 601 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla10g00376 | 745 | Gene3D | WRKY domain | 320 | 386 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla10g00376 | 745 | ProSiteProfiles | WRKY domain profile. | 536 | 601 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla10g00376 | 745 | Gene3D | WRKY domain | 528 | 594 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla10g00376 | 745 | MobiDBLite | consensus disorder prediction | 283 | 333 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla10g00362 | Cla-Chr10:4828806 | Cla10g00376 | Cla-Chr10:5037257 | 0 | dispersed | |
Cla10g00376 | Cla-Chr10:5037257 | Cla10g00433 | Cla-Chr10:5809593 | 1.89E-99 | dispersed | |
Cla10g00374 | Cla-Chr10:5003276 | Cla10g00376 | Cla-Chr10:5037257 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61839 | PF03106 | WRKY | 3.00E-24 | CL0274 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g00376 | K18835 | - | csv:101207853 | 1323.15 |