Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00376 ATGGGGAGGACTGATGATAATGTTGCTATTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAGACCTGCCATGGACACTACCAGCAGTGATCATAAAACTGAAGAACTCTTTCTCAGGCCTCGAGAACATACGGTATCTGAAAACGCCGTTGCAAGAGGCGGGATCCCGGGTGCCAATTCTGGTGACCGAGCAACAGAGTTCGGTACGTTCTCGGAGCAGAAATTTCGTGGGGGACTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATCAGATCAACAGATCACTCTTTGAATTCAGAAGTAAAGTCTCCTTACTTGACAATACCACCTGGTCTCAGCCCAACTACATTGCTAGATTCACCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCAATTTTTAGCAAATGTTAGTAACAATCGGAGCTCGACGATGATGTCGGAGGCCAACAACAAAGGCAACAACAATCCGTTCGATGATAACAGTACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTATTCTCAGTGCAGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATCGAATTGGTCACCATCCTCAAGTGGGACTCTCTACATCGTACATGGAGAAGGACGATGTGGGTAAGACTGTGTTGGATGATCAAAGACCTTTTGATTCTCTGTGTGGTGGTGGTGAACATTCTTCACCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTAGTGGTTGCGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAATTGTCAGGTCAAGAAGAAAGTTGAACGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCACCAAATCGACGAGCAGCGATTGGATCTTCTGATTCCCATATCAATATGCAACCAGACATCCCTGCACAAGCAGGCCAACAGAGTGCTGAAGTTTCAGTTTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCAAGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATAGCAGTCATATTGAAACAGCTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCGAGAGTTGTCGTTCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAACCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACAGTGAGGAAGCATGTTGAGCGGGCGTCACATGACCTGAAGTCCGTGATAACCACATATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACGGGTCAAAACTCGACCGCAGCAATGCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCCTTTGGCTTTGCTGGAAGACAGCAGATGGGCACTGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGACTGGGAAATCTGACCATGGCAGCTGTTGGCCAAGCCAAGCTTCCTGTTATGCCAATGCATCCTTACTTAGCACAAGCACACCATGTTCATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2238 46.38 MGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSRPAMDTTSSDHKTEELFLRPREHTVSENAVARGGIPGANSGDRATEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFQFLANVSNNRSSTMMSEANNKGNNNPFDDNSTSFAFRPSVESGSSFILSAAASKTASATILPQSCPRIEVPVPRSENSFQSHLVEPSLSLPQNRIGHHPQVGLSTSYMEKDDVGKTVLDDQRPFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGSGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRAAIGSSDSHINMQPDIPAQAGQQSAEVSVWEDSQKGIPTGAPDWMQENLEVTSSASLGPEYGNQPNPLQAQNSSHIETAEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAMQTHVHRPGPPQPQNTIPRFERPAFGFAGRQQMGTAHGFAFGMNQPGLGNLTMAAVGQAKLPVMPMHPYLAQAHHVHEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5037257 5042476 - ClCG10G004000.1 Cla10g00376 282035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00376 745 SMART WRKY_cls 326 384 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00376 745 SMART WRKY_cls 541 600 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00376 745 MobiDBLite consensus disorder prediction 595 621 - -
Cla10g00376 745 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 105 696 IPR044810 GO:0003700
Cla10g00376 745 MobiDBLite consensus disorder prediction 476 508 - -
Cla10g00376 745 SUPERFAMILY WRKY DNA-binding domain 325 385 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00376 745 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 105 696 - -
Cla10g00376 745 MobiDBLite consensus disorder prediction 603 621 - -
Cla10g00376 745 ProSiteProfiles WRKY domain profile. 327 385 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00376 745 Pfam WRKY DNA -binding domain 327 383 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00376 745 Pfam WRKY DNA -binding domain 542 598 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00376 745 SUPERFAMILY WRKY DNA-binding domain 533 601 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00376 745 Gene3D WRKY domain 320 386 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00376 745 ProSiteProfiles WRKY domain profile. 536 601 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00376 745 Gene3D WRKY domain 528 594 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00376 745 MobiDBLite consensus disorder prediction 283 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00362 Cla-Chr10:4828806 Cla10g00376 Cla-Chr10:5037257 0 dispersed
Cla10g00376 Cla-Chr10:5037257 Cla10g00433 Cla-Chr10:5809593 1.89E-99 dispersed
Cla10g00374 Cla-Chr10:5003276 Cla10g00376 Cla-Chr10:5037257 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61839 PF03106 WRKY 3.00E-24 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00376 K18835 - csv:101207853 1323.15