Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g00387 | ATGGCCCCTTTAAAATTTCGGCCGCCCGGTCGAAATGGTGCTTTTCCGGCCATTCCGACCGGCGACCTCCGCCTTTCTTCTAAAGCATTGCCAGTTAACAAGTTCAACCCCTTAATTAATGCCGTGGATGCGAAAGCCAACAATGTTACTAACCGTGATGCACGAACTTATAAAGAATTCTTACACAGGGAAATTTGTGGTGAGGGAACGCTTGATTTCACGAAATTGAATGGGAAGATTGTGGTTTGCCTTCGAGGGGTTAACTCAAGAGTGGCCAAAGGTTATGTAGCTGCTCAGGCAGGGGCTGTTGGGATGATTCTGGTTAACGATGAGCTAAGTGGGAATGAGATTTTAGCTGATGCACACATCATTCCAGCTTCCAATGTAAACTATAATGATAGCATATCCATCTCCCAATATATCAGCTCTACAACGACACCAATGGCTTACATAAGTCCTGCGAGGACAACACTTGGAGTCAAGCCCGCCCCAACAATAATGGCTGATTTCTCAGGAAGAGGCCCTAATACAATCGAGGAGTCAATCCTCAAGCCAGATGTAACAGCACCAGGTGTGAATATAATGGCAGCTTACCCCAGTGGAATACTGTTGTCAAATATACCAGTTGATCATCGTCGAGTTCCTTTTAAGGTAGACTCTGGCACATCCATGGCCTGCCCCCATGTTTCAGGCATTGTAGGCCTTCTCAAAACCCTAAATCCAAAATGGAGTCCAGCCGCCATTAAATCTGCAATCATGACTACAGCCAAAACAAGAGACAACAACTTACATCCAATTTTAGACTCCACTGGACTCAAAGCAACTCCATTAGCATACGGCGCTGGACATGTTCATCCAAACGGTGCGATGGACCCTGGCCTCGTTTACGACATTACAATCGACGATTACCTCAATTTCTTGGGACCCTGTGACGATCAATCGAAAGGTGAAGAATGTGGGAAGTCCAGGGAGCCAAGTATATTGGAATTTGCCGCCATGGATGAAGAGAAAAGCTTCAAGGTTGTGTTGCAAAGCACTGGAAAGGGAAATGAAGAGAGTTATGTGTTTGGAACATTGGTTTGGTCAGATGACAAACACAATGTTAGAAGCCCAATTGTTGTTAAGTTGGGGGAATAA | 1137 | 45.29 | MAPLKFRPPGRNGAFPAIPTGDLRLSSKALPVNKFNPLINAVDAKANNVTNRDARTYKEFLHREICGEGTLDFTKLNGKIVVCLRGVNSRVAKGYVAAQAGAVGMILVNDELSGNEILADAHIIPASNVNYNDSISISQYISSTTTPMAYISPARTTLGVKPAPTIMADFSGRGPNTIEESILKPDVTAPGVNIMAAYPSGILLSNIPVDHRRVPFKVDSGTSMACPHVSGIVGLLKTLNPKWSPAAIKSAIMTTAKTRDNNLHPILDSTGLKATPLAYGAGHVHPNGAMDPGLVYDITIDDYLNFLGPCDDQSKGEECGKSREPSILEFAAMDEEKSFKVVLQSTGKGNEESYVFGTLVWSDDKHNVRSPIVVKLGE | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 5265365 | 5267190 | + | ClCG10G004110.1 | Cla10g00387 | 282046 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g00387 | 378 | PANTHER | SUBTILISIN-LIKE PROTEASE SBT5.4 | 25 | 308 | - | - | |
| Cla10g00387 | 378 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 323 | 378 | IPR045051 | - | |
| Cla10g00387 | 378 | Gene3D | Peptidase S8/S53 domain | 159 | 303 | IPR036852 | GO:0004252|GO:0006508 | |
| Cla10g00387 | 378 | CDD | PA_subtilisin_like | 32 | 151 | - | - | |
| Cla10g00387 | 378 | Pfam | PA domain | 66 | 133 | IPR003137 | - | |
| Cla10g00387 | 378 | Pfam | Fibronectin type-III domain | 324 | 374 | IPR041469 | - | |
| Cla10g00387 | 378 | Gene3D | - | 317 | 376 | - | - | |
| Cla10g00387 | 378 | SUPERFAMILY | Subtilisin-like | 128 | 294 | IPR036852 | GO:0004252|GO:0006508 | |
| Cla10g00387 | 378 | SUPERFAMILY | PA domain | 72 | 115 | IPR046450 | - | |
| Cla10g00387 | 378 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 25 | 308 | IPR045051 | - | |
| Cla10g00387 | 378 | PANTHER | SUBTILISIN-LIKE PROTEASE SBT5.4 | 323 | 378 | - | - | |
| Cla10g00387 | 378 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 221 | 231 | IPR023828 | - | |
| Cla10g00387 | 378 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 1 | 290 | - | - | |
| Cla10g00387 | 378 | Gene3D | - | 33 | 158 | - | - | |
| Cla10g00387 | 378 | Pfam | Subtilase family | 134 | 268 | IPR000209 | GO:0006508|GO:0008236 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla10g00387 | Cla-Chr10:5265365 | Cla02g00312 | Cla-Chr2:3021280 | 1.42E-110 | dispersed | |
| Cla10g00383 | Cla-Chr10:5153729 | Cla10g00387 | Cla-Chr10:5265365 | 2.50E-08 | proximal | |
| Cla10g00387 | Cla-Chr10:5265365 | Cla10g00388 | Cla-Chr10:5273841 | 5.70E-169 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g00387 | - | - | cmo:103491006 | 421.009 |