Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00387 ATGGCCCCTTTAAAATTTCGGCCGCCCGGTCGAAATGGTGCTTTTCCGGCCATTCCGACCGGCGACCTCCGCCTTTCTTCTAAAGCATTGCCAGTTAACAAGTTCAACCCCTTAATTAATGCCGTGGATGCGAAAGCCAACAATGTTACTAACCGTGATGCACGAACTTATAAAGAATTCTTACACAGGGAAATTTGTGGTGAGGGAACGCTTGATTTCACGAAATTGAATGGGAAGATTGTGGTTTGCCTTCGAGGGGTTAACTCAAGAGTGGCCAAAGGTTATGTAGCTGCTCAGGCAGGGGCTGTTGGGATGATTCTGGTTAACGATGAGCTAAGTGGGAATGAGATTTTAGCTGATGCACACATCATTCCAGCTTCCAATGTAAACTATAATGATAGCATATCCATCTCCCAATATATCAGCTCTACAACGACACCAATGGCTTACATAAGTCCTGCGAGGACAACACTTGGAGTCAAGCCCGCCCCAACAATAATGGCTGATTTCTCAGGAAGAGGCCCTAATACAATCGAGGAGTCAATCCTCAAGCCAGATGTAACAGCACCAGGTGTGAATATAATGGCAGCTTACCCCAGTGGAATACTGTTGTCAAATATACCAGTTGATCATCGTCGAGTTCCTTTTAAGGTAGACTCTGGCACATCCATGGCCTGCCCCCATGTTTCAGGCATTGTAGGCCTTCTCAAAACCCTAAATCCAAAATGGAGTCCAGCCGCCATTAAATCTGCAATCATGACTACAGCCAAAACAAGAGACAACAACTTACATCCAATTTTAGACTCCACTGGACTCAAAGCAACTCCATTAGCATACGGCGCTGGACATGTTCATCCAAACGGTGCGATGGACCCTGGCCTCGTTTACGACATTACAATCGACGATTACCTCAATTTCTTGGGACCCTGTGACGATCAATCGAAAGGTGAAGAATGTGGGAAGTCCAGGGAGCCAAGTATATTGGAATTTGCCGCCATGGATGAAGAGAAAAGCTTCAAGGTTGTGTTGCAAAGCACTGGAAAGGGAAATGAAGAGAGTTATGTGTTTGGAACATTGGTTTGGTCAGATGACAAACACAATGTTAGAAGCCCAATTGTTGTTAAGTTGGGGGAATAA 1137 45.29 MAPLKFRPPGRNGAFPAIPTGDLRLSSKALPVNKFNPLINAVDAKANNVTNRDARTYKEFLHREICGEGTLDFTKLNGKIVVCLRGVNSRVAKGYVAAQAGAVGMILVNDELSGNEILADAHIIPASNVNYNDSISISQYISSTTTPMAYISPARTTLGVKPAPTIMADFSGRGPNTIEESILKPDVTAPGVNIMAAYPSGILLSNIPVDHRRVPFKVDSGTSMACPHVSGIVGLLKTLNPKWSPAAIKSAIMTTAKTRDNNLHPILDSTGLKATPLAYGAGHVHPNGAMDPGLVYDITIDDYLNFLGPCDDQSKGEECGKSREPSILEFAAMDEEKSFKVVLQSTGKGNEESYVFGTLVWSDDKHNVRSPIVVKLGE 378
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 5265365 5267190 + ClCG10G004110.1 Cla10g00387 282046
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00387 378 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 25 308 - -
Cla10g00387 378 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 323 378 IPR045051 -
Cla10g00387 378 Gene3D Peptidase S8/S53 domain 159 303 IPR036852 GO:0004252|GO:0006508
Cla10g00387 378 CDD PA_subtilisin_like 32 151 - -
Cla10g00387 378 Pfam PA domain 66 133 IPR003137 -
Cla10g00387 378 Pfam Fibronectin type-III domain 324 374 IPR041469 -
Cla10g00387 378 Gene3D - 317 376 - -
Cla10g00387 378 SUPERFAMILY Subtilisin-like 128 294 IPR036852 GO:0004252|GO:0006508
Cla10g00387 378 SUPERFAMILY PA domain 72 115 IPR046450 -
Cla10g00387 378 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 25 308 IPR045051 -
Cla10g00387 378 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 323 378 - -
Cla10g00387 378 ProSitePatterns Serine proteases, subtilase family, serine active site. 221 231 IPR023828 -
Cla10g00387 378 ProSiteProfiles Serine proteases, subtilase domain profile. 1 290 - -
Cla10g00387 378 Gene3D - 33 158 - -
Cla10g00387 378 Pfam Subtilase family 134 268 IPR000209 GO:0006508|GO:0008236
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00387 Cla-Chr10:5265365 Cla02g00312 Cla-Chr2:3021280 1.42E-110 dispersed
Cla10g00383 Cla-Chr10:5153729 Cla10g00387 Cla-Chr10:5265365 2.50E-08 proximal
Cla10g00387 Cla-Chr10:5265365 Cla10g00388 Cla-Chr10:5273841 5.70E-169 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00387 - - cmo:103491006 421.009