Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00390 ATGGCTTCCCCTGGGAATCCAAACTCAAATCCAACGAACCCACCATTTGATGTTCAGAAATTCTTTAAACCCGCCATTTCAAACCCTACGCCGACCTCCCAAAACCCTACCCTCATGAATTCACCTCCATTTCCGCCTCCTTCTTCTTCTTACCCACCTCCCACTGGTCCTTTCTCTTACCCACTCCAGAACGCGCCATTTCATCATCCTTATCATCCTCCTCATCATCCAAATCAAGTTCCGTACTCTCAAGACCAATTTTCTAACCTTCATCATCAGCGCTCTCTTTCTTACCCTACTCCGCCGCTTCAGCCTTCTCCTCCTCCGGTCAATATCGTTGTCCCTCAGAACAATCCGGCTCAGAGCTCTGGTGCTCGGATAATGGCGATGATTAGAGCCCCTGGTTCTAATCTTGAACAACTTCCTCAACCCCCTGCTCCATTGGGTTCGATGCCGTCTCCTTCTTCGGGCGTTCCTGAATCTTCAGCGCCTCCTAATGTTCCAATCATGACTACTATTCCCATGATGCAAGGGGTCAATCCTGGCATTTCGCCTACTGGGCCGGTTCGAATGCCAAGCAGTAAGCTTCCTAAAGGGCGGCATTTGATCGGTGAGCATGTGGTGTATGATGTGAATGTTAGGTTGCAAGGAGAGATCCAGCCACAGCTCGAAGTGACGCCAATTACCAAATACGGTTCAGATCCTCAGCTTGTGTTGGGACGTCAAATTGCGGTCAACAAGACATATATATGCTATGGATTGAAACAGGGGAACATTCGAGTTCTTAATATCAATACTGCACTAAGATCTTTGTTTCGAGGCCATGAAAAGAGGGTTACTGACATGGCATTCTTCGCCGAAGATGTTCACCTTTTGGCTAGTGTTGACGTAGGTGGACGAGTTTATGTATGGAAGATATCAGAGGGCCCTGATGAAGAAACTAAGCCGCAAATCACTGGAAAAGTTGTTATCTCCCTTCATATGGAAGGAGGAGAGGGGGAAATTGTGCATCCACGAGTTTGCTGGCATTGTCACAAACAGGAAGTTTTGGTAGTTGGATTTGGGAAGGCTGTTCTCAGAATTGACACAACCAAAGTTGGGAAGGGTGAAAGCTTTTCTGCCGAAGCTCCTCTCAAATTTTCTCTTGATAAGTTGATTGATGGCGTCCAGCTTGTTGGGAAGCATGATGGAGAAGTGACCGAGTTGTCCATGTGCCAGTGGATGACTTCTCGATTAGTTTCTGCTTCTATGGATGGGACGATCAAAATCTGGGAAGATCGCAAGGCATCACCTTTGCTGGTTTTGAGACCACATGATGGCCAACCAGTTAATGCGGCCACTTTCTTGACTGCTCCTGATCGACCAGATCACATTATACTCATAACAGCTGGGCCTCTGAATCGGGAAGTGAAAATATGGTCATCTGCAAGTGAGGAAGGTTGGCTGCTTCCTAGTGATGCTGAATCGTGGAAATGCACCCAGACCCTGGAATTGAAGAGTTCAGCTGAAAGTCAAGTTGAAGAAGCTTTCTTTAATCAAATTGTAGCATTATCTCAAGCTGGCCTTCTTTTGCTTGCTAATGCTAAGAAGAATGCTATATATGCAATTCACTTGGATTATGGTCTTAATCCAGCCTCGACACGGATGGATTACATAGCAGAGTTTACTGTTACGATGCCGATTTTAAGTTTTACTGGAACAAGTGAAATATTAGACCGTCTAACACATATTGTCCAGGTTTATTGCGTACAAACACAAGCTATACAACAGTATGCTTTAGACTTATCTCAGTGCTTACCCCCACCATTGGACAATGTGGGATTAGAGAAGGCAGATTCTAGTGTTTCACAGGATTCTGCTGGTGTTGAAGGACTGGCTGCATTGTTTCCTTCTGGGAGCAAACCAACTGACATACCCTTCACTAGTTCTGCACCCAGGGGTTCAGGGCTAGTCAATGGCTCTGAAAGTGCTAGTGCAGAAAGATATCCTGCAAGCACCGTGTCTCAAGATGCAGCATCCGTTGCAAATACAGAATCTAAACCTGCTACACTGTCACCTGTAGCTAGTAACACAGACATTGTCTCTACTGCGTCACCTCCTCTTCCTTTGAGCCCCCGCTTGTCTAGAAATCTGTCTGGTTTTAGAAGTCCAGTGGTTGCATTTGAGCCTATTACTGCAGTTAGTGATCATGCTGCTGACCGACGTGGTAATGACTATCCAGTCAACCGACAAATGGATGCCATTCACCCAAATTTGTCTGAGGTGTCTTCCTTGGATGATGAGTCCAGAAACAATGAGGAGAAAATTGCACGGGAAGAACTGTCTAATGTCCTTAATCCTCCTATTGTGTTTAAGCATCCAACTCATCTTATTACCCCCTCTGAGATACTGATGGCTGTTTCGTCCTCTGAAACAACTAATATCATTGAAGGTAAGAGTGAGGGAGAGACAAATATCCAGGATGTAGTGGTTAACAATGATGTTGAAGATACGGAGCTGGAGGTTAAAGAGGTAGGTGAAATGAAGTCTCCTCAGAACGGTGAATATGGTAGTAGAGGTGAGCCTCAAAACCTTTCTCTGGAGAACAAGGAAAAATACTTCTGCTCACAAGCTTCAGATCTTGGTATGGAAGTGGCCCGAGAGTGTAGTGCACTATCATCTGAAACTTATGTCATTGAGGAAGCCCCGCAAGTTGATGCTAATATAATGGACTCTGAGGTAGATTCCCAAGCAGGTGAGGGAGATAGAATGTCGGCCAAAGATGTGTCTGAAAAGGTTTCTGAATCATCTATATCAACGACACTGCAAATTCCAACACCTAGTACAAAGGGGAAGAAGAACAAGGGGAAAAATTCTCAAGCCTCAGGCTTGGTTTCCCCATCTCCAAGTGCTTTCAATTCTAATGAATCTTCCACCGAACCTTGCGGTAGTTCAAGCCTTCCCCCACCTGAAGCAGCTTTTCCTCCTTTACTGGCCATCCAAGATACGTTGAATCAGATAATGAGCACTCAGAAAGAAATGCAAAAGCAGATGCAGATGACATTTGCAGTTCCAGTCACTAAAGAAGGTAAAAGGCTGGAGGCAGCTCTTGGACGGAGCATGGAGAAGGCCTTGAAAGCAAATAATGATGCATTATGGGCTCGGATTCAGGAAGAAAGTGCTAAAAATGAGAAATTGTTGCGAGATACTATGCAAAAAATAACTAGTTTAGTTGCAAACTTTGTGAACAAGGACTTGCCTGCCTTTTTAGAGAAAGCTCTAAAGAAGGAAATGTCTGCCATTGGGCCGGCTGTGGTTCGCACAATAACACCAGCTATTGAGAAAACAATTTCTTCTGCCATCACAGATTCTTTCCAGAGAGGAGTAGGTGATAAGGCTGTAAATCAACTTGAGAAATCTGTCAACTCAAAGCTTGAAGCTACTGTTGCTAGGCAAATCCAAGCACAGTTTCAAACCTCTGGCAAGCAAGCTCTGCAGGATGCATTAAAATCTAGTTTTGAAGCATCAGTAATTCCTGCCTTTGAAATGTCGTGCAAAACCATGTTTGAGCAAGTAGATTCTACCTTTCAGAAAGGACTGGTTGAACATTCAGCTGCAGCTCAGCAGCACTTCGACTCTTCACATTCTCCATTGGCACTTGCCTTGAGGGATGCTATAAATTCAGCATCAACAATTGCACAGTCCCTGAGTGGAGAATTGGCTGAAGGCCAAAGAAAACTGATAGCCCTTGCGACCGCAGGAGCAAATGCTAGTTCGATAAATCCTTTAGTTACCCAACTAAGCAATGGGCCATTGGGTGCTCTCCATGAGAAGGTTGAGGTTCCTTTGGATCCTACCAAAGAACTGTCAAGATTGTTATCTGAAAGGAAATATGAGGAAGCTTTCACCGCTGCTTTACAGAGAAGTGATGTGAACATTGTCTCTTGGTTATGTTCTCAGGTTGATCTTAGGGCCGTTCTGGCAAATCCCCTTGCTTTGAGTCAAGGAGTACTGCTGTCCCTTTTGCAACAATTAGCATGTGATATCAACAAGGATAGATCCCGGAAAATTGCATGGATGACTGAAGTGGCTGCTGCCGTTAATCCCACAGATCCAATGATAGCAATGCACATACGTCCCATCTTCGAACAGGTGTATCAGATTTTGAACCATCAACGGACCTTGCCAACAGTCTCTCCAGTCGAGCTCACTGGCATTCGTATAATCATGCATCTTGTCAACTCCATGATGGTAACTTGTAAATGA 4245 44.83 MASPGNPNSNPTNPPFDVQKFFKPAISNPTPTSQNPTLMNSPPFPPPSSSYPPPTGPFSYPLQNAPFHHPYHPPHHPNQVPYSQDQFSNLHHQRSLSYPTPPLQPSPPPVNIVVPQNNPAQSSGARIMAMIRAPGSNLEQLPQPPAPLGSMPSPSSGVPESSAPPNVPIMTTIPMMQGVNPGISPTGPVRMPSSKLPKGRHLIGEHVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFGKAVLRIDTTKVGKGESFSAEAPLKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWEDRKASPLLVLRPHDGQPVNAATFLTAPDRPDHIILITAGPLNREVKIWSSASEEGWLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSQAGLLLLANAKKNAIYAIHLDYGLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDLSQCLPPPLDNVGLEKADSSVSQDSAGVEGLAALFPSGSKPTDIPFTSSAPRGSGLVNGSESASAERYPASTVSQDAASVANTESKPATLSPVASNTDIVSTASPPLPLSPRLSRNLSGFRSPVVAFEPITAVSDHAADRRGNDYPVNRQMDAIHPNLSEVSSLDDESRNNEEKIAREELSNVLNPPIVFKHPTHLITPSEILMAVSSSETTNIIEGKSEGETNIQDVVVNNDVEDTELEVKEVGEMKSPQNGEYGSRGEPQNLSLENKEKYFCSQASDLGMEVARECSALSSETYVIEEAPQVDANIMDSEVDSQAGEGDRMSAKDVSEKVSESSISTTLQIPTPSTKGKKNKGKNSQASGLVSPSPSAFNSNESSTEPCGSSSLPPPEAAFPPLLAIQDTLNQIMSTQKEMQKQMQMTFAVPVTKEGKRLEAALGRSMEKALKANNDALWARIQEESAKNEKLLRDTMQKITSLVANFVNKDLPAFLEKALKKEMSAIGPAVVRTITPAIEKTISSAITDSFQRGVGDKAVNQLEKSVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKTMFEQVDSTFQKGLVEHSAAAQQHFDSSHSPLALALRDAINSASTIAQSLSGELAEGQRKLIALATAGANASSINPLVTQLSNGPLGALHEKVEVPLDPTKELSRLLSERKYEEAFTAALQRSDVNIVSWLCSQVDLRAVLANPLALSQGVLLSLLQQLACDINKDRSRKIAWMTEVAAAVNPTDPMIAMHIRPIFEQVYQILNHQRTLPTVSPVELTGIRIIMHLVNSMMVTCK 1414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5300075 5313984 + ClCG10G004140.2 Cla10g00390 282049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00390 1414 MobiDBLite consensus disorder prediction 909 923 - -
Cla10g00390 1414 MobiDBLite consensus disorder prediction 1 84 - -
Cla10g00390 1414 MobiDBLite consensus disorder prediction 636 687 - -
Cla10g00390 1414 MobiDBLite consensus disorder prediction 1 16 - -
Cla10g00390 1414 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 21 1414 - -
Cla10g00390 1414 MobiDBLite consensus disorder prediction 36 60 - -
Cla10g00390 1414 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 21 1414 IPR045152 GO:0031087
Cla10g00390 1414 SUPERFAMILY WD40 repeat-like 246 505 IPR036322 GO:0005515
Cla10g00390 1414 MobiDBLite consensus disorder prediction 907 987 - -
Cla10g00390 1414 MobiDBLite consensus disorder prediction 924 978 - -
Cla10g00390 1414 MobiDBLite consensus disorder prediction 137 162 - -
Cla10g00390 1414 Gene3D - 220 534 IPR015943 GO:0005515
Cla10g00390 1414 Gene3D - 1325 1414 IPR044938 -
Cla10g00390 1414 SMART WD40_4 428 474 IPR001680 GO:0005515
Cla10g00390 1414 SMART WD40_4 265 305 IPR001680 GO:0005515
Cla10g00390 1414 SMART WD40_4 388 425 IPR001680 GO:0005515
Cla10g00390 1414 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 314 IPR001680 GO:0005515
Cla10g00390 1414 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 224 538 IPR032401 -
Cla10g00390 1414 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 434 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00390 K12616 EDC4; enhancer of mRNA-decapping protein 4 - csv:101211283 2500.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00390 Cla_Chr10 FPKM 3.236145 3.914201 6.183725 5.516985 5.51516 4.72128 4.731456 1.887746 2.766819 2.306774
Cla10g00390 Cla_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0