Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00392 ATGTGTGAGCTTTCAAAAGAAAGTGAATTAAGAAACTTAGAGAGGATAAATAAGCATTTCTGCGCTCAAAAACCTACAAAATTTGTTCCTGTTCTGTTCCGTTGTCTCGGGGTAGCCGATCGACGACAACCGAAGCTTCCCTTTTGGTTTCTTCCACTGCAGGCTAAGTCTTCGCGAAAATTTTGCGACCCTGAGTTTCAAGTTGCTAAAAGAATGTTGGAGAGTTTTGCTTACAAGAGCGTGAAGATTGTAATCTTCACAAATAAACTCAACTTCCTGATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCATTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTAGCTTTTTACACTGGTCCTACAGCTGGTGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAGCTGATTATATCAATTTTTGCCCTGAGAAGTCAAATGATACGTGTTGTTCAGCTATCATTACTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACCTTTAACAAGGCAACTGCTGTTGTCAACTCAGGGTTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCCACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCGAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGACGAATCTTTATTCTTCCGTTTATGAGCTACAAGTTCAGGAAGAAATTCAGAGTGAAGAAAGCTCAGATGAAGATGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAAAATATCTGGTCGATGCAATTGAAATTGCATCTGAATCATTGAAAATCCCAGTGTCGTTTATTAGTGTTGTACTGCTTCCAATTGTGGGGAATGCCGCTGAGCATGCAAGTGCAATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATTGGATCATCAACCCAGATATCTATGTTTGGGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGGCAACCAATGGACTTAAACTTCCAACTCTTCGAGACGGCAACACTTTTTATAACTGTAATTGTCGTAGCTTTCTTGCTCCAGGAAGGAACTTCAAATTACTTCAAGGGACTGATGCTCATCCTTTGTTATCTGATAGTTGCTGCTAGTTTTTTCGTGCACGTCGATCCTCCTTTACCCGAGAATAAACTGGGGAGGACGGAAGATTTACTTGAAGAAAATGCTTTAAAGTTTTGTTACAATGCTAGAGGCATTGGGAGCCCATAG 1455 41.72 MCELSKESELRNLERINKHFCAQKPTKFVPVLFRCLGVADRRQPKLPFWFLPLQAKSSRKFCDPEFQVAKRMLESFAYKSVKIVIFTNKLNFLMPFGPLAILVDKLAGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTAGGLLNATFGNATELIISIFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQTNLYSSVYELQVQEEIQSEESSDEDEAPEISKWESVIWLSILTAWISVLSKYLVDAIEIASESLKIPVSFISVVLLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFQLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGRTEDLLEENALKFCYNARGIGSP 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5330239 5336474 + ClCG10G004160.2 Cla10g00392 282051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00392 484 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 65 454 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cla10g00392 484 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 65 454 - -
Cla10g00392 484 TIGRFAM caca2: calcium/proton exchanger 81 448 - -
Cla10g00392 484 Pfam Sodium/calcium exchanger protein 112 267 IPR004837 GO:0016021|GO:0055085
Cla10g00392 484 Pfam Sodium/calcium exchanger protein 306 445 IPR004837 GO:0016021|GO:0055085
Cla10g00392 484 Gene3D - 141 287 IPR044880 -
Cla10g00392 484 Gene3D - 292 449 IPR044880 -
Cla10g00392 484 TIGRFAM cax: calcium/proton exchanger 94 448 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01035 Cla-Chr2:20991062 Cla10g00392 Cla-Chr10:5330239 0 dispersed
Cla03g00075 Cla-Chr3:795633 Cla10g00392 Cla-Chr10:5330239 7.14E-92 dispersed
Cla04g00705 Cla-Chr4:21971987 Cla10g00392 Cla-Chr10:5330239 5.93E-110 dispersed
Cla07g01351 Cla-Chr7:30671629 Cla10g00392 Cla-Chr10:5330239 0 dispersed
Cla10g00392 Cla-Chr10:5330239 Cla10g02088 Cla-Chr10:36577096 2.15E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00392 K07300 - csv:101205761 647.121