Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g00396 | ATGACTACCACGGCGGAGGAAACAACCATCACTTTCTCCTCCGATCATGGCGCCGCCCAAGAACAACAACACTACGCTTACGCTATGCAGCTGGTTACCTCATCGGTGCTGCCAATGACACTCCAAGCAGCGTTCGAGCTCGGTGTGTTCGAGATCTTGGCAAAGGCTGGGGATGGGGCCAAGCTCTCTCCGCCAGAGATAGCGGCTGAGATAACTACGACAAACCCGGATGCAGCGTCGATGATTGATCGGATGTTGAGGCTTCTCGCCAGCCACTCGGTGGTGGGATGCTCTGTGGGATTTGATGAAGATGGGAAAATGCAGAGACTTTATAGCCTTACCCCAGTTTCTAAGTATTATGTTCGTAATCAAGATGGTGTCTCGTTGGGTCCAACTTTGTCGTTGATTCAAGATAAAGTCTTTCTCCATAGCTGGAGTGAGCTAAAGAATGCAGTTATTGAAGGAGGAGTTCCTTTCAATAGGGCTCATGGGGGAGTTCATGCCTTTGAATATCCAGGCTTGGATCCAAGATTTAACCAAGTTTTCAATGCTGCAATGATAAATCACACCACTATAGCCATCAAGAAAATTGTCAAATCCTACAAAGGCTTTGAAAACATCAAGCAACTAGTTGATGTTGGTGGTGGCCTTGGGGTCACCCTTCAAATCATCACTTCTACATACCCTTCCATCAAAGCCATCAACTTCGACTTACCTCATGTCATTCGCGATGCCCCTCCCTATCCTGGTGTAGAACATGTGGGAGGAGACATGTTTGAGAAAGTTCCAAATGGAGATGCTGTTTTCATGAAGTGGATACTTCATGATTGGAGTGACGAGCATTGTGTAAAGTTATTGAAAAATTGCTACGTTGCGATCCCAAATGAAGGAAAGGTAATCATAGTGGATTCAGTGGTTCCAACAATACTTGAAACCACAGATGTAACAAAATGCATTGCCCAATGCGATGTGCTTATGATGACTCAAAATCCAGGAGGAAAGGAGCGAACTCGAGATGAATTCGAGGCCCTCGCAACCAAAGCTGGGTTTAAACATGTCATATTCCAGTGCTTTGTGTCTAATCTCTGGGTTATAGAGTTTCTTAAAAATTAA | 1113 | 45.19 | MTTTAEETTITFSSDHGAAQEQQHYAYAMQLVTSSVLPMTLQAAFELGVFEILAKAGDGAKLSPPEIAAEITTTNPDAASMIDRMLRLLASHSVVGCSVGFDEDGKMQRLYSLTPVSKYYVRNQDGVSLGPTLSLIQDKVFLHSWSELKNAVIEGGVPFNRAHGGVHAFEYPGLDPRFNQVFNAAMINHTTIAIKKIVKSYKGFENIKQLVDVGGGLGVTLQIITSTYPSIKAINFDLPHVIRDAPPYPGVEHVGGDMFEKVPNGDAVFMKWILHDWSDEHCVKLLKNCYVAIPNEGKVIIVDSVVPTILETTDVTKCIAQCDVLMMTQNPGGKERTRDEFEALATKAGFKHVIFQCFVSNLWVIEFLKN | 370 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 5399824 | 5402713 | - | ClCG10G004200.1 | Cla10g00396 | 282055 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g00396 | 370 | Gene3D | Vaccinia Virus protein VP39 | 121 | 369 | IPR029063 | - | |
| Cla10g00396 | 370 | PIRSF | O-mtase | 6 | 369 | IPR016461 | GO:0008168 | |
| Cla10g00396 | 370 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 126 | 367 | IPR029063 | - | |
| Cla10g00396 | 370 | SUPERFAMILY | Winged helix DNA-binding domain | 20 | 123 | IPR036390 | - | |
| Cla10g00396 | 370 | PANTHER | CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE | 20 | 368 | - | - | |
| Cla10g00396 | 370 | Pfam | Dimerisation domain | 39 | 90 | IPR012967 | GO:0046983 | |
| Cla10g00396 | 370 | Pfam | O-methyltransferase domain | 145 | 351 | IPR001077 | GO:0008171 | |
| Cla10g00396 | 370 | Gene3D | - | 6 | 120 | IPR036388 | - | |
| Cla10g00396 | 370 | PANTHER | O-METHYLTRANSFERASE | 20 | 368 | IPR016461 | GO:0008168 | |
| Cla10g00396 | 370 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 29 | 369 | IPR016461 | GO:0008168 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g01665 | Cla-Chr7:33912553 | Cla10g00396 | Cla-Chr10:5399824 | 2.57E-147 | dispersed | |
| Cla10g00396 | Cla-Chr10:5399824 | Cla10g01871 | Cla-Chr10:34622562 | 9.94E-63 | dispersed | |
| Cla10g01243 | Cla-Chr10:27196432 | Cla10g00396 | Cla-Chr10:5399824 | 4.80E-39 | dispersed | |
| Cla10g01244 | Cla-Chr10:27206214 | Cla10g00396 | Cla-Chr10:5399824 | 1.23E-26 | dispersed | |
| Cla10g00395 | Cla-Chr10:5382142 | Cla10g00396 | Cla-Chr10:5399824 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g00396 | K13066 | - | csv:101214916 | 590.497 |