Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00404 ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG 528 56.63 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5486885 5487412 + ClCG10G004280.1 Cla10g00404 282063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00404 175 MobiDBLite consensus disorder prediction 1 24 - -
Cla10g00404 175 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 149 - -
Cla10g00404 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cla10g00404 175 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982
Cla10g00404 175 MobiDBLite consensus disorder prediction 118 134 - -
Cla10g00404 175 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cla10g00404 175 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cla10g00404 175 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cla10g00404 175 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla10g00404 175 MobiDBLite consensus disorder prediction 118 175 - -
Cla10g00404 175 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982
Cla10g00404 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00404 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101204640 308.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02162 Cla-Chr2:36706590 Cla10g00404 Cla-Chr10:5486885 3.14E-09 dispersed
Cla07g00885 Cla-Chr7:24476703 Cla10g00404 Cla-Chr10:5486885 5.96E-56 dispersed
Cla09g00572 Cla-Chr9:5299531 Cla10g00404 Cla-Chr10:5486885 9.57E-45 dispersed
Cla10g00404 Cla-Chr10:5486885 Cla10g01956 Cla-Chr10:35391106 3.88E-44 dispersed
Cla10g00404 Cla-Chr10:5486885 Cla02g01361 Cla-Chr2:27936449 1.72E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g673 . . . . . . . . . Cmo06g00682 . . . . . . . . . . . . . . Cla10g00404 Cam10g0401 Cec10g0423 Cco10g0413 Clacu10g0408 Cmu10g1240 Cre10g0657 . . Cone14ag1222 Cone15ag1295 . Csa03g00425 . Cme06g02755 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00494 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00422 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.5e-49 190.7
Cla02g00899 CCT,ECH 74 185 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.5e-38 154.5
Cla10g00422 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.6e-51 198.4
Cla07g00885 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.2e-37 152.9
Cla02g00899 CCT,ECH 69 196 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cla10g00404 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.1 4.5e-50 194.5
Cla07g00885 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 6.1e-47 184.1
Cla02g01361 . 860 965 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.4 2.4e-43 172.2
Cla09g00572 . 175 270 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 2.0e-37 152.5
Cla02g01361 . 847 966 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 1.2e-49 193.0
Cla02g00899 CCT,ECH 69 181 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.5e-42 169.5
Cla10g00404 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 3.6e-41 164.9
Cla07g00885 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.6e-41 164.9
Cla09g00572 . 171 266 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.9e-38 155.2
Cla09g00572 . 173 270 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.3
Cla10g00404 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 6.1e-39 157.5
Cla02g00899 CCT,ECH 86 185 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.1e-39 157.5
Cla07g00885 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.1e-38 154.5
Cla02g01361 . 853 994 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.9 4.5e-56 214.5
Cla10g01956 . 132 262 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.6 1.2e-48 189.9
Cla02g00899 CCT,ECH 74 184 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.4e-44 176.4
Cla07g00885 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.1e-41 164.9
Cla10g00404 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.6 2.7e-40 162.2
Cla09g00572 . 174 276 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 8.0e-37 150.6
Cla07g00885 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.2e-44 176.0
Cla02g00899 CCT,ECH 90 191 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.8e-44 175.3
Cla10g00404 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 8.7e-41 164.1
Cla02g01361 . 873 973 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.3e-39 160.2
Cla09g00572 . 175 275 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.8e-39 158.3
Cla02g00899 CCT,ECH 69 200 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.4e-52 201.4
Cla10g00404 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 2.0e-49 192.6
Cla07g00885 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.8e-45 177.2
Cla02g01361 . 873 985 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 2.2e-43 172.6
Cla09g00572 . 175 271 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cla02g01361 . 858 994 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.6 4.6e-56 214.5
Cla10g01956 . 132 261 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.7 1.9e-46 182.6
Cla02g00899 CCT,ECH 74 193 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.8e-45 178.7
Cla10g00404 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 5.5e-41 164.5
Cla07g00885 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 7.1e-41 164.1
Cla09g00572 . 174 276 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61841 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00404 Cla_Chr10 FPKM 28.800329 30.184368 58.729031 54.704567 5.326689 6.529585 5.719254 77.047218 80.085365 77.475464