Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00404 ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG 528 56.63 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5486885 5487412 + ClCG10G004280.1 Cla10g00404 282063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00404 175 MobiDBLite consensus disorder prediction 1 24 - -
Cla10g00404 175 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 149 - -
Cla10g00404 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cla10g00404 175 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982
Cla10g00404 175 MobiDBLite consensus disorder prediction 118 134 - -
Cla10g00404 175 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cla10g00404 175 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cla10g00404 175 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cla10g00404 175 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla10g00404 175 MobiDBLite consensus disorder prediction 118 175 - -
Cla10g00404 175 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982
Cla10g00404 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02162 Cla-Chr2:36706590 Cla10g00404 Cla-Chr10:5486885 3.14E-09 dispersed
Cla07g00885 Cla-Chr7:24476703 Cla10g00404 Cla-Chr10:5486885 5.96E-56 dispersed
Cla09g00572 Cla-Chr9:5299531 Cla10g00404 Cla-Chr10:5486885 9.57E-45 dispersed
Cla10g00404 Cla-Chr10:5486885 Cla10g01956 Cla-Chr10:35391106 3.88E-44 dispersed
Cla10g00404 Cla-Chr10:5486885 Cla02g01361 Cla-Chr2:27936449 1.72E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61841 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00404 K08065 - csv:101204640 308.531