Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g00404 | ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG | 528 | 56.63 | MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR | 175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5486885 | 5487412 | + | ClCG10G004280.1 | Cla10g00404 | 282063 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g00404 | 175 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cla10g00404 | 175 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 | 1 | 149 | - | - | |
Cla10g00404 | 175 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 24 | 88 | IPR003958 | - | |
Cla10g00404 | 175 | SUPERFAMILY | Histone-fold | 22 | 123 | IPR009072 | GO:0046982 | |
Cla10g00404 | 175 | MobiDBLite | consensus disorder prediction | 118 | 134 | - | - | |
Cla10g00404 | 175 | PRINTS | CCAAT-binding transcription factor subunit A signature | 52 | 70 | - | - | |
Cla10g00404 | 175 | PRINTS | CCAAT-binding transcription factor subunit A signature | 71 | 89 | - | - | |
Cla10g00404 | 175 | PRINTS | CCAAT-binding transcription factor subunit A signature | 90 | 108 | - | - | |
Cla10g00404 | 175 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 55 | 71 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cla10g00404 | 175 | MobiDBLite | consensus disorder prediction | 118 | 175 | - | - | |
Cla10g00404 | 175 | Gene3D | Histone, subunit A | 11 | 135 | IPR009072 | GO:0046982 | |
Cla10g00404 | 175 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 149 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02162 | Cla-Chr2:36706590 | Cla10g00404 | Cla-Chr10:5486885 | 3.14E-09 | dispersed | |
Cla07g00885 | Cla-Chr7:24476703 | Cla10g00404 | Cla-Chr10:5486885 | 5.96E-56 | dispersed | |
Cla09g00572 | Cla-Chr9:5299531 | Cla10g00404 | Cla-Chr10:5486885 | 9.57E-45 | dispersed | |
Cla10g00404 | Cla-Chr10:5486885 | Cla10g01956 | Cla-Chr10:35391106 | 3.88E-44 | dispersed | |
Cla10g00404 | Cla-Chr10:5486885 | Cla02g01361 | Cla-Chr2:27936449 | 1.72E-48 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61841 | PF00808 | CBFD_NFYB_HMF | 1.80E-27 | CL0012 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g00404 | K08065 | - | csv:101204640 | 308.531 |