Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00422 ATGGAATGTGGAGGAACTGCTCAAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGGCAACACCCTAAACCAACTTCTGCACTGAATATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAACGGTGGAGCCGCCACTGGCAACTCCCCAGCAACCAGCCCCGTCCCAGTGGCGACTGCAAACAATGAGCAAAGCCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCAGACGACGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAGCGTTGCCAACGAGAGCAGCGCAAGACGGTAACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCGTACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGCGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA 714 54.76 MECGGTAQGGGDGFHSYKRQHPKPTSALNMLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5674336 5677267 + ClCG10G004460.2 Cla10g00422 282081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00422 237 MobiDBLite consensus disorder prediction 22 77 - -
Cla10g00422 237 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 58 203 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cla10g00422 237 ProSitePatterns NF-YB/HAP3 subunit signature. 118 134 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla10g00422 237 Gene3D Histone, subunit A 74 188 IPR009072 GO:0046982
Cla10g00422 237 SUPERFAMILY Histone-fold 84 177 IPR009072 GO:0046982
Cla10g00422 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 88 151 IPR003958 -
Cla10g00422 237 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 58 203 - -
Cla10g00422 237 MobiDBLite consensus disorder prediction 1 77 - -
Cla10g00422 237 PRINTS CCAAT-binding transcription factor subunit A signature 134 152 - -
Cla10g00422 237 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Cla10g00422 237 PRINTS CCAAT-binding transcription factor subunit A signature 153 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01497 Cla-Chr6:28511397 Cla10g00422 Cla-Chr10:5674336 1.61E-15 dispersed
Cla10g00422 Cla-Chr10:5674336 Cla10g01956 Cla-Chr10:35391106 7.68E-34 dispersed
Cla10g00422 Cla-Chr10:5674336 Cla02g01361 Cla-Chr2:27936449 7.70E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61842 PF00808 CBFD_NFYB_HMF 3.00E-25 CL0012 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00422 K08065 - csv:116402762 379.022