Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00432 ATGCAGGAACCTTCAAGAAAGAAAGTTCCAAATCAATCTCATAGGTTCTATGAACAGCCACAGCAAGAACCTGGTTCCTGTTACTGGCCTCCTATCAACCACGGAGGTGTCTTGTATCCTGACGATGTATACGAACAAAATCACTTACCATCTGAGACTTTCAAACATTCTTGCAACCTTGAGTCGTCCTCGGGAACTAGTAGTTACCCTCCTCAAAATTCTTCCTCTACTGCTAGCTTCACATCAAATGGAAGCCCTTCTTCACACCAAGAGTGCCATTCATACCCGTTAGACCCCTATTATTCTCCCGACAATAATTGTGGCTCACCTGTAAGTAGATCTTGCTTAACAGATGCCACTGCTGATGACTTAAGGCACAAGATCAGGGAATTGGAGACTGCAATGCTTGGACCTGATGCAGATAGGCTTGACATCTATTCTGTCACGGAACCAGTTAATCCTGTATTACCTGTGCAAGAAATGGGGTGGAATGATGTGGCTGAGATAATCTCTAGAAGGGATTTGAAAGAGATGCTTTGTGCTTGTGCTCGAGCAATAGAAGAAAACGATATGATGACTGGAGAATGGTTGGTGTCAGAGTTACGTGGAATGGTCTCGGTTTCTGGTGAGCCGATTAAGCGTTTAGGGGCCTACTTGTTAGAGGCACTTGTTGCAAGGACAGCATCTTCAGGTAGTTCTATCTACAAAGCCCTAAGATGTAAAGAGCCTATAGGTGCTGAATTGCTCTCATACATGCATGTTCTCTACGACATTTGCCCTTATTTCAAGTTTGGGTACCTTTCAGCAAATGGGGCAATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCACATAATTGATTTTCAGATAGCTCAGGGAAATCAGTGGATCACATTGATGCAAGCTCTGGCCAATCGGCCTGGAGGGCCCCCAAAGGTTACTATTACAGGCATAGACGATTCGACTTCAGCTTTTGCTCGAGGAGGGGGGCTTGAGATTGTAGGAAAAAGGTTGACGATTTTGGCAGAGTCATTAAATGTGCCCTTTGAATTCCATGGCATTGCAGGCTCTGCTTCTGAAATTCAACGCGAAGATCTTAAAGTTCAACCAGGTGAAGCGATTGCTGTGAGTTTTGCCTTGGTGCTGCACCATATGCCAGATGAAAGTGTTGGTAGTCAGAATCACCGGGATCGAATTTTGCGGCTGGTCAAGAGTTTGTCTCCAAAAGTCGTGACGGTGGTCGAGCACGAGTCGAACAACAATACAGCTCCCTTTTTTCCCCGTTTCCTCCAGACATTGAAGTATTATACTGCTGTTTTCGAGTCCATAGATGTGACCCTCCCGAGAGATCACAAAGAGCGGATCAACGTGGAGCAGCACTGTTTAGCCCGGGACATCGTAAATTTAGTAGCATGTGAGGGACCCGAAAGAGTCGAACGCCATGAACTTTTCGGAAAGTGGAGATCACGGCTACTCATGGCTGGGTTTAAGCCACATCCTTTAAGCCCTTTTGTGAATGCTACTATTGAGGCACTGCTAAAGAACTACTGTGACAAGTACACACTTGAAGAAAGGGATGGAGTTCTATATCTTGGTTGGTTGAATCAAAATTTGGTTACCTCTAGTGCTTGGATTTGA 1638 44.93 MQEPSRKKVPNQSHRFYEQPQQEPGSCYWPPINHGGVLYPDDVYEQNHLPSETFKHSCNLESSSGTSSYPPQNSSSTASFTSNGSPSSHQECHSYPLDPYYSPDNNCGSPVSRSCLTDATADDLRHKIRELETAMLGPDADRLDIYSVTEPVNPVLPVQEMGWNDVAEIISRRDLKEMLCACARAIEENDMMTGEWLVSELRGMVSVSGEPIKRLGAYLLEALVARTASSGSSIYKALRCKEPIGAELLSYMHVLYDICPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKVTITGIDDSTSAFARGGGLEIVGKRLTILAESLNVPFEFHGIAGSASEIQREDLKVQPGEAIAVSFALVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVEHESNNNTAPFFPRFLQTLKYYTAVFESIDVTLPRDHKERINVEQHCLARDIVNLVACEGPERVERHELFGKWRSRLLMAGFKPHPLSPFVNATIEALLKNYCDKYTLEERDGVLYLGWLNQNLVTSSAWI 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5807527 5809164 + ClCG10G004610.1 Cla10g00432 282091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00432 545 MobiDBLite consensus disorder prediction 55 95 - -
Cla10g00432 545 Pfam GRAS domain family 176 544 IPR005202 -
Cla10g00432 545 MobiDBLite consensus disorder prediction 1 31 - -
Cla10g00432 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Cla10g00432 545 MobiDBLite consensus disorder prediction 55 92 - -
Cla10g00432 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 544 IPR005202 -
Cla10g00432 545 PANTHER GIBBERELLIN-RESPONSIVE PROTEIN, PUTATIVE-RELATED 17 544 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02085 Cla-Chr1:35220676 Cla10g00432 Cla-Chr10:5807527 0 dispersed
Cla02g00919 Cla-Chr2:14042250 Cla10g00432 Cla-Chr10:5807527 0 dispersed
Cla09g00909 Cla-Chr9:9478221 Cla10g00432 Cla-Chr10:5807527 2.15E-144 dispersed
Cla10g00432 Cla-Chr10:5807527 Cla11g00724 Cla-Chr11:10282118 2.89E-82 dispersed
Cla10g02012 Cla-Chr10:35930830 Cla10g00432 Cla-Chr10:5807527 6.18E-63 dispersed
Cla10g00432 Cla-Chr10:5807527 Cla03g00132 Cla-Chr3:1342433 9.64E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61844 PF03514 GRAS 1.40E-129 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00432 - - csv:101220072 1007.28