Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00433 ATGGACCCCACTGACTCCGACCTCGCCGATCCATCTCATGCCTCCTCCTCCGCTGGCGCTAAGTACAAGCTCATGTCTCCGGCCAAGCTTCCGATCTCTAGGTCCCCTTGCATTACTATCCCTCCTGGCCTCAGCCCCACTTCCTTTCTCGACTCTCCTGTTCTGCTTACCAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCGATGGCACATGACTCTTCTAGCTCAGCTATTTATCCAGTGACCACCATGGCCTTCTCAAATACTAATGCTTCAGATGAAGGAAGATCCAACTACTTCGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAATGTGAACAATCTTCTGAAGTTCAAGTTCAAGGTCAACCTCAACCATTTACTGCTCCACCCATGACTAAAATTGAGATCAATGTCGTTTCAAATGATTTGAGCCGATCAACCCAGATGGATACACATCCAGTTGGCTCAGGGCCTAGTGCTCCTGAAGCCGATGGAGATGATATCAGCCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTGGTTTCAGATAGGTTGTCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCTCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAGCTGATATTATCTATAAGGGTACCCACGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGATTGTTCAGCATGTATGCTCAGACAGTTCATAACCTTGAGCCAAATGGAACTACAGAACCATCACTGGCCGCAAACGATAGCATCAATGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCAGGATGAGGTTGATGACGATGACATATTCTCGAAGCGGAGGAAAATAGAACTTGGTGGTTTCGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTAGATATACTGGATGACGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAATCCCAACCCAAGGAGTTATTACAAATGCACAAATGTTGGATGCCCTGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCGAAAGCTGTTATAACTACATATGAGGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCGGGGGTCCATCGACAATTGCACCATCGAGGTATAGACTCGAGGAGAGCGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCACTGGCACGGGTGGTGAGAATAGATCAAATGATTACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCAAACTCCAAATGGCAATTTCAACTTTGAAGTAGTTCAAGAGAACTCAGCCCCGACCTATTTCGGTGTGATCAATAGAGGTATAAATCAACATGGATCGAGAGAGAGTTTGAGTGAAAGCCACAATAAGGAGATTGCTCCGCTAAATCATTCGTCTCACCCATATCCGACGAGCATTGGGAGAATACTAACAGGGCCTTAA 1728 45.95 MDPTDSDLADPSHASSSAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYPVTTMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKCEQSSEVQVQGQPQPFTAPPMTKIEINVVSNDLSRSTQMDTHPVGSGPSAPEADGDDISHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIADIIYKGTHDHPKPQPSRRYSASASVNVQEDGPDKPSPLTGQDDRLFSMYAQTVHNLEPNGTTEPSLAANDSINEGAGTTLPCKNQDEVDDDDIFSKRRKIELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVGGPSTIAPSRYRLEESDTISLDLGVGIGTGTGGENRSNDYRQALHSQLVENQTPNGNFNFEVVQENSAPTYFGVINRGINQHGSRESLSESHNKEIAPLNHSSHPYPTSIGRILTGP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5809593 5815229 - ClCG10G004600.2 Cla10g00433 282092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00433 575 MobiDBLite consensus disorder prediction 183 198 - -
Cla10g00433 575 MobiDBLite consensus disorder prediction 551 567 - -
Cla10g00433 575 SUPERFAMILY WRKY DNA-binding domain 210 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00433 575 MobiDBLite consensus disorder prediction 1 20 - -
Cla10g00433 575 Gene3D WRKY domain 376 442 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00433 575 Pfam WRKY DNA -binding domain 390 446 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00433 575 Pfam WRKY DNA -binding domain 214 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00433 575 Gene3D WRKY domain 207 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00433 575 MobiDBLite consensus disorder prediction 264 301 - -
Cla10g00433 575 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 550 IPR044810 GO:0003700
Cla10g00433 575 MobiDBLite consensus disorder prediction 315 339 - -
Cla10g00433 575 ProSiteProfiles WRKY domain profile. 208 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00433 575 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 11 550 - -
Cla10g00433 575 MobiDBLite consensus disorder prediction 315 346 - -
Cla10g00433 575 MobiDBLite consensus disorder prediction 541 575 - -
Cla10g00433 575 ProSiteProfiles WRKY domain profile. 384 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00433 575 SUPERFAMILY WRKY DNA-binding domain 381 449 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla10g00433 575 SMART WRKY_cls 389 448 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00433 575 SMART WRKY_cls 213 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla10g00433 575 MobiDBLite consensus disorder prediction 161 214 - -
Cla10g00433 575 MobiDBLite consensus disorder prediction 445 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00374 Cla-Chr10:5003276 Cla10g00433 Cla-Chr10:5809593 5.01E-99 dispersed
Cla10g00376 Cla-Chr10:5037257 Cla10g00433 Cla-Chr10:5809593 1.89E-99 dispersed
Cla10g00433 Cla-Chr10:5809593 Cla11g00430 Cla-Chr11:4957420 8.99E-18 dispersed
Cla03g00015 Cla-Chr3:176047 Cla10g00433 Cla-Chr10:5809593 1.55E-13 transposed
Cla03g01024 Cla-Chr3:19476497 Cla10g00433 Cla-Chr10:5809593 1.10E-08 transposed
Cla10g00362 Cla-Chr10:4828806 Cla10g00433 Cla-Chr10:5809593 5.79E-14 transposed
Cla10g00433 Cla-Chr10:5809593 Cla02g00274 Cla-Chr2:2700132 9.51E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61845 PF03106 WRKY 3.30E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00433 - - bhj:120090463 1085.09