Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00435 ATGGAATCAGATCTTGGCAAGCTCTTCATTGGCGGAATTTCGTGGGATACTGATGAAGAGCGTCTTAGGGAATATTTTGGCAACTATGGCGAAGTGGTCGAGGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGCTATTGCCGAGCGAGTCATTTTGGAGAAGCACGTCATCGATGGTCGAACTCTGAGTTCTCTTCTGGATTATGCCAAATTCCGTGTTGTTTTCTTGTTAAATGTAGTCACTTTCAATTTTCAGGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAATAGTGGTAGCATTCATGGTTCTCCTAGCTCGGGACGAACAAAAAAGATTTTCGTTGGAGGTTTAGCTTCGACAGTCACTGAGGCTGACTTTCAGAAGTATTTTGATCAGTTTGGAACAATCACTGATGTTGTTGTTATGTATGATCACAGCACCCAAAGGCCAAGGGGTTTTGGCTTCATTACTTATGACTCGGAGGAGTCTGTTGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTTAAGAGAGCAATCCCGAAAGAGCTAACCCCAGGGCCCAACCGGAGCCCTCTTGTAGGATATAACTATGGTATGAGTAGGCCTAGTGGTTTTCTTAACAGCTATACTCAAAGCTATAATATGAGTCCTTTGGGAAGTTATGGAGTCCGGGCAGATGGTAGGTTGAGTCCAATAATTAGCAGTCGAACTGGGGTTCCTCATTTTGGTACTGCTAATTATGGAGTGGGTGTGAATTTGGAGCAAGGGATGAGACAAGGCTATGGCAGGACTTTGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAATTCCTATTATAATGGCAATTCAAATAGGTACATTGCCCCGATTGGCTACAGCGGGGGCAATGGAAGAGGCGATTCCCCCTTAAGCTCAAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACCGCCATGAACTCTTCCGGCCCTGGCACTTTCTCTGGCTCTGGAACGGGGAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAGTTTGCCTGCTGTTGTTAATCATGTTGGAGGGCATGCTCCTGGCTATACTAATAATGGTTATGCAATTGGAGACAATGAGCTCGGGTTCAGAGGAGGCTATGGAAGAAATGGAGTAGTCTCGAATGTGGCAACACGAAAAGCATTTGTTGAAACGACCAATGGTTATGAGAGGTCATATAGGGATTTGTATCGTGATGAAGTGGTGCATGATGATTCGACTTGGCAGTCTGCTGCTCCTGAACTGGATGGTTCTGTGTCTTTTGGTTATGGTCTTGGTAACCTTGCTTCAGATGATCCAGCCAAGAGTTCCGAGAGTTTTCTTGCAAGTTATGATGTTTCAAGCAGACAATCAACTAGAGGAATTGCTGCGTAG 1503 44.71 MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAIAERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSIHGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSYNMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQEQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGSGTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYTNNGYAIGDNELGFRGGYGRNGVVSNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDPAKSSESFLASYDVSSRQSTRGIAA 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5854919 5857332 + ClCG10G004630.1 Cla10g00435 282094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00435 500 SUPERFAMILY RNA-binding domain, RBD 125 229 IPR035979 GO:0003676
Cla10g00435 500 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 500 - -
Cla10g00435 500 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 500 - -
Cla10g00435 500 CDD RRM1_hnRNPA_hnRNPD_like 8 74 - -
Cla10g00435 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 190 IPR000504 GO:0003723
Cla10g00435 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Cla10g00435 500 Gene3D - 6 117 IPR012677 -
Cla10g00435 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 207 IPR000504 GO:0003723
Cla10g00435 500 Gene3D - 127 213 IPR012677 -
Cla10g00435 500 SUPERFAMILY RNA-binding domain, RBD 4 75 IPR035979 GO:0003676
Cla10g00435 500 SMART rrm1_1 7 78 IPR000504 GO:0003723
Cla10g00435 500 SMART rrm1_1 131 203 IPR000504 GO:0003723
Cla10g00435 500 CDD RRM2_DAZAP1 128 207 IPR034131 GO:0003723
Cla10g00435 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 75 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00435 K14411 MSI; RNA-binding protein Musashi - csv:101220541 893.649
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla09g02092 Cla10g00435 CCT
Cla09g02092 Cla10g00435 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00921 Cla-Chr2:14053011 Cla10g00435 Cla-Chr10:5854919 3.49E-163 dispersed
Cla05g02657 Cla-Chr5:37777483 Cla10g00435 Cla-Chr10:5854919 5.48E-10 dispersed
Cla06g00688 Cla-Chr6:8813931 Cla10g00435 Cla-Chr10:5854919 8.72E-06 dispersed
Cla10g00435 Cla-Chr10:5854919 Cla10g01320 Cla-Chr10:28124756 9.49E-38 dispersed
Cla10g00435 Cla-Chr10:5854919 Cla07g00119 Cla-Chr7:1384361 2.06E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g609 . . . . Bpe09g00137 . Bma10g00587 Bma13g01106 Cmo16g00980 Cmo06g00879 . . . . . . . . . . . . . . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 Cone6ag0030 Cone9ag0029 Cone14ag1200 Cone15ag1220 . Csa03g00443 . Cme06g02800 Blo07g00874 . Bda05g00687 Bda12g00948 . Bpe03g00761 . . . . . . Cma16g00941 . Car16g00905 Cpe14g00765 . Bhi11g00503 Tan01g1803 . . . . . . . . . . . . Lsi05g00527 . Chy06g01874 .
Vvi19g706 . . . . Bpe09g00116 . . Bma13g01125 . . Cma01g01065 Cma09g01022 Car01g00939 Car09g00926 Sed08g1410 Cpe06g00830 Cpe02g00832 Bhi09g01794 Tan01g3210 Cmetu01g2405 . . Mch11g1296 . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 . . . . Lsi02g01814 . . . . . Bda05g00687 Bda12g00975 . Bpe03g00748 . . . Cmo01g01107 Cmo09g01025 . . . . . . . . . . . . . Cla09g02092 Cam09g2178 Cec09g2244 . . . . . . Chy01g01127 Cme01g00879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003655 1 5 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 0 4 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00435 Cla_Chr10 FPKM 6.269029 7.718995 5.320911 6.127797 11.086935 12.492542 11.634463 5.484307 6.300798 7.313295
Cla10g00435 Cla_Chr00 FPKM 4.17876 5.123401 5.355826 5.206605 7.246945 7.603629 7.273269 5.682855 5.904382 5.769683