Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00437 ATGTTGATACTTCAATTTCTTTCAGAATCAGTAAAAATGAAGTCGAATACGGCAGAATCAATGGAGACTGGTTTCTTGGGAAACATATCTGCTTCTTCCTTTCGAAACTTCCTTCCTCGATCCATTTCTTCAAAGAAAAACCTCATTTCCTCCATTTCTAAGAAAACTCCTAAATCTAACTCTGAAAATACCCCTCCTGTTCACCCAAACATTCCTCTCAAGGAAAATCAAATTCCCATTTCCAAGTCCGCCTTCACTCCAGATTCCAATCTCGATCTGTCTGCATCGCAACCTCTTAATTTGAAGGATGAAGTTGTTCAATCAGACAGTCAGTATGAAGCTCCTAACCCCCCTGATCCACCGATCAAGGTTGTTGTGAGAATTAGACCTAATGATAGAGAGGAGGAAGTGGAGAGGACGGTTAAGAGGGTTTCTTCAGATGAATTGACGTTTGGGGATCGTAAATTTTCTTTCGATTCGGTTTTCGATTCAGATTCAAAACAGGAAGATATCTTTTCGAAGATCGGAATTCCGCTAGTCAAAGATGCATTGGCTGGTTACAACACTTCCATCATGTCATTTGGTCAGACGGGAAGTGGTAAGACATTCACAATGTGGGGTCCCCCAAGTGCCATGGTTGAAGACCCTTCACCATTTAGTAGCCAAGGTCTTGCTCCTCGCATCTTCCAAATGCTATTTTCAGAGATTCAAAAAGAACAAGAGAATTCTGAAGGAAAATTGATAAATTATCAGTGTCGATGTTCTTTTGTAGAGATATTTAATGAACAAATTGGGGATTTGCTTGATCCTACGCAGAGGGACCTTAAGATAAAGGATGATGCAAAGAATGGACTGTATGTGGAGAATGTCACAGAGGAATACGTCACAAGCTATGATGATGTGACTCAAATTCTTATCAAGGGACTTTCAAGTAGAAAAGTGGGAGCAACCACTATAAATTCTAAGAGCTCTAGGTCTCATATTTTGTTTACTTTCATTCTTGAGTCATGGTGCAAGGAAACATCATCGAAGTGCTTTGGTAGTTCAAAGACAAGCAGAATCAGCCTTGTTGATCTTGCTGGATTGGATAGGAATGTAAATGATGCCCAGGGTAGACAATCCACAAGAGAAGGCAAGAATTTGAAGAAGTCTATGTCTCGGCTTGGGCAATTGATCGATTCATTATCTAAAGAAACTGAATTAAGACCATCTGAAGATCGTTTGTACAGAGGTTCCTGCTTGACCCATTTATTAAGAGAATCATTGGGGGGAAATGCCAAGCTCACAGTTATTTGTGCTATCTCTCCGGATAACAACTATTCAGGTGAGACATTAAGGACGTTAAGATTTGGACAACGATTGAAATCCATTAAGAATCAACCAATCATAAATGAAATAAAAGAAGATGACGTAAATGATCTGAGTGATCAAATTCGTCAACTAAAGGAAGAACTTATAAGAGCAAATGCCAATTCAGGAAAGTCAGTTGGAAAGACAGGTTACTTTCAAGGGCCTAATGTAAGAGACAGCCTGAATCATTTAAGAGTTAGTATCAATCGCTCTCTGATTTTGCCATGCATTGATAATGACTCAGACGAAGAGGTTAGTTGTAATGAGGAAGATGTGAGGGAATTGCATGAGCAACTGGATAAGGTCCATAGCTTCTCTGAAGAGAACTCAGATAAAAGAGATTCACTTCACTTTTCCTCTGTAGGAGAAAGTTTTGCTTCATATTCAATGAGTGATGATGAAGTAAGTTATCCCCAAACAATTGAAGAAATAAAACCAGAAGAACATCAGGATGAAAATTTTCATGAGGATAAGATTATGTTAGCAGATAATCTTAGTAGCCATGATTCCAAGGTTCCTGATCCTGTGAATCGAAGGAGTATTTCTGTCAGCTCATTCTATCACTTTCCTAATCTTGAAGATCCACCCTTGTCCGAGTCTCCAAAAATTGGAAATTCTCATAGGAAAAGTTTGGCTGTTGCACCAAGTTTTGCAGACCATCATGAAAGTAAGATGTCAGACAGCTTTAAGTTTAATAAAGATGTACTGAGGCAGTCACTGAGTCAGAGTAAGAACATCAGATCCTCGCTTCGATCGAGCAATAAATTCGAGGATCCTACTGAGTCATTGGCAGCTAGTCTTCAAAGAGGTTTGAAGATAATTGATTATCACCAGCAAAGCTCAGCATTAAACAAATCTTCAGTATCCTTCTCCTTTGAACACCTGGCGCGAAAATCATGTCCAGAAGTCAACAAAGCTGTAGAGTCTCTTCAAACATTGGAAGAAGATAATGCCATCGCCATATCTTCTCCCCATCAGCTTTGTGCATCTTGCCAAAGAAGAATTTTCGAGAATGACACTAATGAAGTCCTGAGTAGCTCCAACGAACTCGTAGCAGTAAACCAATCCAGGAATCTCAATGCTGTGGTAGGATTCAAGCAGGGAGACGACCTTGTAAAGGAGAGTGTACAAGAGAAATGTGAAATAAAGGAAGTGCAGGAGGTTCAGAACAATGAAAATTGTTTTACTGATGTGTCTGAGAAGGAAGAACTTCTTAAAGAAATTCAAAATTTAAGGAGTAAGCTGCAGGCATTTGCTGATGTTTCTGCTAACAAGTCAACTGACAAGCTGAGATCGTCGCTATTGTTGTCCCGCTCCATCCAACTAAGGAAAAGCGGTCTAGGAAGAGGAGGTTGCCAAACTACTAATGAGGAGGAACTTGAAAAGGAAAGGGAGAGATGGACTGAAATGGAGAGTGAGTGGATTTCTTTAACTGATGAACTGAGAGTTGATTTGGAATCCATTCGACAGCGTGCGGAGAAGGTGGAGCAGGAACTGAACACGGAGAAGAAATGCAATGAGGAGTTGGAGGATGCCCTCCACAGATCTGTTCTTGGACATGCTAGATTTGTGGAGCATTATGCTGAATTGCAAGAGAAATATAACGAGTTGGTTGGTAAACACCGTGCCATCATGGGAGGGATAGCTGAGGTGAAAAGGGCTGCACAAAAGGCTGGTTCCAAAGGCCACGGTTCTCGCTTTTCGAAATCACTTGCTGCTGAGCTTTCAGCTCTGAGATTTGAGAGGGACAGAGAGAGAGAATTCTTGAAAAAGGAAAACAAAAGCCTTAAGCTCCAACTTAGAGACACTGCTGAAGCTGTTCATGCTGCTGGGGAACTTCTTGTTAGGCTTAGAGAAGCAGAAAATTCAGCATCAGTTGCAGAGGAGAACTTTACATCAGTTCAACAAGAGAACGAGAAGTTGAAGAAGCAAATGGAGAAGCTTAAAAGAAAACATAAAATGGAGATGATTACAATGAAGCAATACCTTGCAGAGAGTAAGTTGCCAGCTTCAGCTCTAGGACCACTGTATGACGATCACTCCGACCTCGGAACCGACAAGAGAGCCTCGTACATGGACGATGATCAAGCCTGGAGATCAGAATTTGGAGCTATATATCAAGAGCAGCACTACTAA 3486 40.79 MLILQFLSESVKMKSNTAESMETGFLGNISASSFRNFLPRSISSKKNLISSISKKTPKSNSENTPPVHPNIPLKENQIPISKSAFTPDSNLDLSASQPLNLKDEVVQSDSQYEAPNPPDPPIKVVVRIRPNDREEEVERTVKRVSSDELTFGDRKFSFDSVFDSDSKQEDIFSKIGIPLVKDALAGYNTSIMSFGQTGSGKTFTMWGPPSAMVEDPSPFSSQGLAPRIFQMLFSEIQKEQENSEGKLINYQCRCSFVEIFNEQIGDLLDPTQRDLKIKDDAKNGLYVENVTEEYVTSYDDVTQILIKGLSSRKVGATTINSKSSRSHILFTFILESWCKETSSKCFGSSKTSRISLVDLAGLDRNVNDAQGRQSTREGKNLKKSMSRLGQLIDSLSKETELRPSEDRLYRGSCLTHLLRESLGGNAKLTVICAISPDNNYSGETLRTLRFGQRLKSIKNQPIINEIKEDDVNDLSDQIRQLKEELIRANANSGKSVGKTGYFQGPNVRDSLNHLRVSINRSLILPCIDNDSDEEVSCNEEDVRELHEQLDKVHSFSEENSDKRDSLHFSSVGESFASYSMSDDEVSYPQTIEEIKPEEHQDENFHEDKIMLADNLSSHDSKVPDPVNRRSISVSSFYHFPNLEDPPLSESPKIGNSHRKSLAVAPSFADHHESKMSDSFKFNKDVLRQSLSQSKNIRSSLRSSNKFEDPTESLAASLQRGLKIIDYHQQSSALNKSSVSFSFEHLARKSCPEVNKAVESLQTLEEDNAIAISSPHQLCASCQRRIFENDTNEVLSSSNELVAVNQSRNLNAVVGFKQGDDLVKESVQEKCEIKEVQEVQNNENCFTDVSEKEELLKEIQNLRSKLQAFADVSANKSTDKLRSSLLLSRSIQLRKSGLGRGGCQTTNEEELEKERERWTEMESEWISLTDELRVDLESIRQRAEKVEQELNTEKKCNEELEDALHRSVLGHARFVEHYAELQEKYNELVGKHRAIMGGIAEVKRAAQKAGSKGHGSRFSKSLAAELSALRFERDREREFLKKENKSLKLQLRDTAEAVHAAGELLVRLREAENSASVAEENFTSVQQENEKLKKQMEKLKRKHKMEMITMKQYLAESKLPASALGPLYDDHSDLGTDKRASYMDDDQAWRSEFGAIYQEQHY 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5879448 5886639 + ClCG10G004650.2 Cla10g00437 282096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00437 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 490 IPR027417 -
Cla10g00437 1161 MobiDBLite consensus disorder prediction 51 74 - -
Cla10g00437 1161 Coils Coil 1060 1108 - -
Cla10g00437 1161 Coils Coil 928 962 - -
Cla10g00437 1161 PANTHER KINESIN-LIKE PROTEIN KIN-12F 88 808 - -
Cla10g00437 1161 MobiDBLite consensus disorder prediction 51 67 - -
Cla10g00437 1161 PANTHER KINESIN-LIKE PROTEIN KIN-12F 795 1159 - -
Cla10g00437 1161 PANTHER CENTROMERE PROTEIN E 88 808 - -
Cla10g00437 1161 Coils Coil 851 871 - -
Cla10g00437 1161 Gene3D Kinesin motor domain 119 497 IPR036961 -
Cla10g00437 1161 PRINTS Kinesin heavy chain signature 353 371 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00437 1161 PRINTS Kinesin heavy chain signature 407 428 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00437 1161 PRINTS Kinesin heavy chain signature 186 207 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00437 1161 PRINTS Kinesin heavy chain signature 317 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00437 1161 SMART kinesin_4 119 465 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00437 1161 Coils Coil 464 491 - -
Cla10g00437 1161 ProSiteProfiles Kinesin motor domain profile. 121 457 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla10g00437 1161 PANTHER CENTROMERE PROTEIN E 795 1159 - -
Cla10g00437 1161 Coils Coil 1036 1056 - -
Cla10g00437 1161 Pfam Kinesin motor domain 136 457 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00437 K10400 KIF15; kinesin family member 15 - csv:101203593 1971.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00769 Cla-Chr5:7338994 Cla10g00437 Cla-Chr10:5879448 7.08E-08 dispersed
Cla09g01723 Cla-Chr9:34504977 Cla10g00437 Cla-Chr10:5879448 1.14E-76 dispersed
Cla10g00437 Cla-Chr10:5879448 Cla10g01789 Cla-Chr10:33807655 6.04E-54 dispersed
Cla10g00437 Cla-Chr10:5879448 Cla03g00174 Cla-Chr3:1918379 7.80E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g604 . . . . Bpe09g00138 . Bma10g00586 Bma13g01105 Cmo16g00977 . . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1198 Cone15ag1218 . Csa03g00446 . Cme06g02803 Blo07g00875 . Bda05g00688 . . Bpe03g00762 . . . . . . Cma16g00939 . Car16g00903 Cpe14g00763 . Bhi11g00510 . . . . . . . . . . . . . Lsi05g00529 . Chy06g01871 .
Vvi19g658 . . . . . . . Bma13g01112 . Cmo06g00688 . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1216 Cone15ag1237 . . . . . Blo10g00863 . Bda12g00961 . . . . . . . . . . . Cpe14g00791 . . . . . . . . . . . . . . . Lsi05g00493 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004807 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00437 Cla_Chr10 FPKM 26.9375 36.020744 300.428864 283.040863 0.261778 1.088717 0.0 0.0 0.507769 0.359458