Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00459 ATGGAGATGAGAGTTCAATTTGCTGTTATTAATGCGTCTCTGCTTGTCAGGTTGATGATGGCACCTTCTGATATATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGATTCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTGGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTGTCTGAAAAGGAGATAAATCGACGTAAAGACATGCTTGCTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACAGAGACAGTTTGCTTGGCCCAGATATGAAATCGGCGGATGTAATGAGCAAGACTGCTGGACTAGACAATCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCTTTAGCAGTTAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTGGACCAACATGTTGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGCAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGGATGCTTCTGTCTGTGGTTGGTATTGTGGTTCTCATCGCTGTCATATGGCTGCTCATTCAATACTTATTCTCGTTGTGGGAGATCTTGGAACGTGTCCGTCGTGTGAATGCGCATACAAATAGGGTCACTATTCGCCTACTACTAATGATGACTCTAACGGCGTTCAACGGACCCAACCGGCCAGCCTCTGAACCGGAGAACGACCGGCCGGTGCCGTCTGCCGTTGCTGCTGACCTTCTCCTTCTAGAATTTATTCTCTATGAGCTTTCTGCAACTTCCTCAGGACTCAGCCTCAGATATGAGTCGATTGAAATCGTTGCGGAGAGCATTGGGATTTCCAACCTTTCCCCTGAGGTTGCTCTTGCTCTCACTCCCGATGTCGAGTACCGGGTCCGTGAAATCATGCAGGAGGCAGTTAAATGCATGCGTCATTCAAAGCGAACTGTTCTCACTTCCATTGATGTGGATAATGCACTTAAATTAAGAAACTTAGAGCCAATATATGGCTTTGCTGCATGCGATAGTTTGCGGTTCAAAAGAGCTGTTGGACACAAGGATCTCTTTTACATTGATGACAAGGATGTGGAGTTAAATAATGTTATTGAGTCACCTTTAGCAAAAGCAACGGTTGATACTTCAGTTGTTGCTCACTGGCTGGCAGTTGAAGGTGTTCAGCCTGCAGTTGCAGAGAACTTGCTGACTGAAGGTGAACCCCATGATGGAAAGAAATCTGACTTGAAGGAGGAAGAACTTCCTTATGATTCCAAAGCACCTACTAAGCATGTGATTTCAAGGGATCTTCAGCTTTACTTTGAGAAAATAACTGGTCTGGTCTTGAACAAGTCTGGGTCAAATCTCTTCAGAGAAGCTTTAAGGAGCTTGTCAGTTGACTCAGGAATTCAACCTTTGCTTCCATACTTCACATGCTTCATTGCCGATGAGTTACACCAATTGATGCCGTCCATCATTACCTGCCTTGTTGCCAAACAATTAGGTAAAAGATTATCTGACAATCATTGGGAGCTTAGAGACTTAGCGGCAAGCCTGGTTTCTTTGATATGCAAAAGATTTGGACATACTTATCACAATATTCAACCTCGTGTTACAAAGACTCTTCTCCATGTTTTCTTGGACCCCTCAAAATTATTGCCTCAGCATTATGGTGCAGTTCAGGGGCTAGCAGATCTTGGTCCCGATGTGGTCCGCCAGCTTATACTACCAAATCTTGAACCGTATATGCAATATCTAGAGATGGAGAAGCAAAAGAATGAAACTAGGAGACATGAAGCTTGGCAAGTTTACAGGACCTTACTGCATGCAGCTGGTAAATGTATGCATGGTTGGCTGAAGGTTTTTCCTCTCTCTCTGTATCCACCAATGTGTAGTACTTCGAAGATAAATGCGAAGATCAATGGGAAAGTCGTGAAGACAATTGCAAATAAACGCAAAGCCAGTGCAGACAACTCCGTGCAGCAACCAGCACTCAAAAAGATGGCAATGGATAGCGCATTGGGTGCAATCCCGATGAACTCCATGATGGTCGATATGCAAGGGGCTGCATCTGGGCTCCCCACACCGCTTGGAGGTTCAAACATCGGCGTCGCTCGAAATTTTCCAAATGAAATGAGGGTAGGGAGGGAAGGTGAACTAGGCTTTAAGGGTTCTACTGCTCTTTCTATAGCATGGAAAGAAGAATTGGATGCTGGGTCATTGCTGACTTCGCTTTTTCCACTTTTTGGGGAAGATCTGTTTCCCTTCATCCCAAAACCCGAGCTATCCTTCTTTCTGTGA 2454 44.46 MEMRVQFAVINASLLVRLMMAPSDIWIKEYNEASKLGDDINGMISERSSFPATGPDSQRHASAIRRKITILGTKVDGLESLLLKLPVKQPLSEKEINRRKDMLAQMRSKVKQMASTLNMSNFANRDSLLGPDMKSADVMSKTAGLDNQGLVEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLAILNKRAKGSCSCFGMLLSVVGIVVLIAVIWLLIQYLFSLWEILERVRRVNAHTNRVTIRLLLMMTLTAFNGPNRPASEPENDRPVPSAVAADLLLLEFILYELSATSSGLSLRYESIEIVAESIGISNLSPEVALALTPDVEYRVREIMQEAVKCMRHSKRTVLTSIDVDNALKLRNLEPIYGFAACDSLRFKRAVGHKDLFYIDDKDVELNNVIESPLAKATVDTSVVAHWLAVEGVQPAVAENLLTEGEPHDGKKSDLKEEELPYDSKAPTKHVISRDLQLYFEKITGLVLNKSGSNLFREALRSLSVDSGIQPLLPYFTCFIADELHQLMPSIITCLVAKQLGKRLSDNHWELRDLAASLVSLICKRFGHTYHNIQPRVTKTLLHVFLDPSKLLPQHYGAVQGLADLGPDVVRQLILPNLEPYMQYLEMEKQKNETRRHEAWQVYRTLLHAAGKCMHGWLKVFPLSLYPPMCSTSKINAKINGKVVKTIANKRKASADNSVQQPALKKMAMDSALGAIPMNSMMVDMQGAASGLPTPLGGSNIGVARNFPNEMRVGREGELGFKGSTALSIAWKEELDAGSLLTSLFPLFGEDLFPFIPKPELSFFL 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6069528 6081572 + ClCG10G004910.2 Cla10g00459 282118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00459 817 MobiDBLite consensus disorder prediction 456 473 - -
Cla10g00459 817 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 147 209 IPR000727 -
Cla10g00459 817 Pfam SNARE domain 184 234 IPR000727 -
Cla10g00459 817 Pfam TAF6 C-terminal HEAT repeat domain 543 630 IPR011442 GO:0006367
Cla10g00459 817 CDD TAF6C 481 661 IPR011442 GO:0006367
Cla10g00459 817 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 536 817 - -
Cla10g00459 817 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 321 535 - -
Cla10g00459 817 Gene3D Histone, subunit A 316 382 IPR009072 GO:0046982
Cla10g00459 817 SUPERFAMILY ARM repeat 509 660 IPR016024 -
Cla10g00459 817 SUPERFAMILY SNARE fusion complex 147 208 - -
Cla10g00459 817 SUPERFAMILY Histone-fold 317 391 IPR009072 GO:0046982
Cla10g00459 817 MobiDBLite consensus disorder prediction 454 473 - -
Cla10g00459 817 CDD SNARE_Qc 152 207 - -
Cla10g00459 817 Gene3D - 149 211 - -
Cla10g00459 817 SMART TAF_cls 317 383 IPR004823 -
Cla10g00459 817 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 536 817 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Cla10g00459 817 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 321 535 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Cla10g00459 817 Pfam TATA box binding protein associated factor (TAF) 321 381 IPR004823 -
Cla10g00459 817 Gene3D - 533 649 IPR046344 GO:0006367
Cla10g00459 817 Gene3D - 480 532 IPR046344 GO:0006367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00459 K03131 TAF6; transcription initiation factor TFIID subunit 6 - csv:101204807 883.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01336 Cla-Chr9:21462579 Cla10g00459 Cla-Chr10:6069528 7.92E-13 dispersed
Cla09g01036 Cla-Chr9:10956463 Cla10g00459 Cla-Chr10:6069528 6.30E-117 transposed
Cla10g00459 Cla-Chr10:6069528 Cla02g00240 Cla-Chr2:2446423 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01285 . 8 338 SNARE and Associated Proteins AT3G24350 64.8 6.7e-102 367.9
Cla04g00533 . 1 309 SNARE and Associated Proteins AT1G08560 69.6 3.7e-101 365.2
Cla01g01917 . 411 714 SNARE and Associated Proteins AT2G18260 54.7 1.9e-86 316.2
Cla10g01736 . 19 279 SNARE and Associated Proteins AT3G11820 80.8 3.5e-115 411.8
Cla01g01480 . 26 282 SNARE and Associated Proteins AT3G11820 72.8 9.0e-103 370.5
Cla03g00522 . 31 281 SNARE and Associated Proteins AT3G11820 66.5 1.1e-92 337.0
Cla10g01288 . 573 827 SNARE and Associated Proteins AT3G11820 52.5 5.0e-69 258.5
Cla10g01736 . 1 279 SNARE and Associated Proteins AT3G52400 63.9 5.9e-92 334.7
Cla01g01480 . 33 282 SNARE and Associated Proteins AT3G52400 64.8 2.4e-85 312.8
Cla03g00522 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 3.6e-81 298.9
Cla10g01288 . 575 827 SNARE and Associated Proteins AT3G52400 50.6 5.4e-61 231.9
Cla03g00522 . 1 299 SNARE and Associated Proteins AT4G03330 69.2 3.1e-108 388.7
Cla10g01736 . 1 284 SNARE and Associated Proteins AT4G03330 57.2 3.1e-84 308.9
Cla01g01480 . 1 297 SNARE and Associated Proteins AT4G03330 52.6 3.9e-79 292.0
Cla10g01288 . 564 827 SNARE and Associated Proteins AT4G03330 53.8 1.2e-67 253.8
Cla03g00522 . 1 299 SNARE and Associated Proteins AT1G61290 79.3 1.0e-127 453.4
Cla10g01736 . 1 284 SNARE and Associated Proteins AT1G61290 62.0 2.6e-91 332.4
Cla01g01480 . 1 297 SNARE and Associated Proteins AT1G61290 56.6 1.6e-85 313.2
Cla10g01288 . 579 827 SNARE and Associated Proteins AT1G61290 50.6 1.9e-62 236.5
Cla03g00522 . 1 299 SNARE and Associated Proteins AT1G11250 78.3 1.8e-124 442.6
Cla10g01736 . 1 284 SNARE and Associated Proteins AT1G11250 62.0 1.6e-93 339.7
Cla01g01480 . 1 292 SNARE and Associated Proteins AT1G11250 57.2 1.1e-86 317.0
Cla10g01288 . 563 827 SNARE and Associated Proteins AT1G11250 50.6 4.9e-66 248.4
Cla10g01288 . 548 846 SNARE and Associated Proteins AT3G03800 73.6 6.0e-112 401.0
Cla10g01288 . 548 745 SNARE and Associated Proteins AT5G08080 78.4 2.4e-78 288.9
Cla10g00138 . 48 319 SNARE and Associated Proteins AT5G16830 56.5 5.0e-73 271.6
Cla10g00138 . 48 319 SNARE and Associated Proteins AT5G46860 62.1 4.2e-77 285.0
Cla10g00138 . 48 237 SNARE and Associated Proteins AT4G17730 76.4 1.8e-72 269.6
Cla10g00138 . 112 319 SNARE and Associated Proteins AT1G32270 54.8 4.3e-50 195.7
Cla07g00385 . 1 336 SNARE and Associated Proteins AT5G05760 65.9 3.3e-111 398.7
Cla08g01285 . 8 338 SNARE and Associated Proteins AT3G24350 64.8 6.7e-102 367.9
Cla02g01497 . 1 327 SNARE and Associated Proteins AT5G26980 76.8 4.8e-128 454.5
Cla09g00505 . 1 356 SNARE and Associated Proteins AT5G26980 59.2 1.3e-96 350.1
Cla02g01497 . 1 329 SNARE and Associated Proteins AT4G02195 64.4 3.4e-105 378.6
Cla09g00505 . 1 356 SNARE and Associated Proteins AT4G02195 59.7 5.6e-100 361.3
Cla02g01497 . 1 328 SNARE and Associated Proteins AT3G05710 76.3 4.1e-130 461.5
Cla09g00505 . 1 356 SNARE and Associated Proteins AT3G05710 57.1 5.2e-93 338.2
Cla09g01036 . 86 310 SNARE and Associated Proteins AT1G16240 69.5 5.8e-83 304.3
Cla10g00459 . 19 243 SNARE and Associated Proteins AT1G16240 65.7 3.7e-77 285.0
Cla09g01036 . 85 310 SNARE and Associated Proteins AT1G79590 68.8 1.9e-82 302.8
Cla10g00459 . 19 243 SNARE and Associated Proteins AT1G79590 66.1 9.9e-79 290.4
Cla06g00045 . 170 315 SNARE and Associated Proteins AT1G28490 69.9 9.6e-50 193.7
Cla10g01938 . 118 381 SNARE and Associated Proteins AT3G09740 79.7 2.8e-113 405.2
Cla02g02052 . 1 265 SNARE and Associated Proteins AT3G09740 67.4 9.9e-95 343.6
Cla02g02052 . 1 265 SNARE and Associated Proteins AT3G45280 65.9 7.9e-92 334.0
Cla10g01938 . 118 381 SNARE and Associated Proteins AT3G45280 64.4 9.0e-88 320.5
Cla10g01938 . 118 378 SNARE and Associated Proteins AT3G61450 68.2 7.5e-95 344.0
Cla02g02052 . 1 262 SNARE and Associated Proteins AT3G61450 61.0 2.0e-84 309.3
Cla11g00615 . 65 272 SNARE and Associated Proteins AT1G51740 69.0 9.2e-71 263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011323 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 0 1 1 0 1 1 1 0 3 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00459 Cla_Chr10 FPKM 33.010994 38.584957 42.679409 45.194958 31.353987 29.175741 31.609222 83.118347 82.204132 81.948692