Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00459 ATGGAGATGAGAGTTCAATTTGCTGTTATTAATGCGTCTCTGCTTGTCAGGTTGATGATGGCACCTTCTGATATATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGATTCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTGGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTGTCTGAAAAGGAGATAAATCGACGTAAAGACATGCTTGCTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACAGAGACAGTTTGCTTGGCCCAGATATGAAATCGGCGGATGTAATGAGCAAGACTGCTGGACTAGACAATCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCTTTAGCAGTTAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTGGACCAACATGTTGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGCAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGGATGCTTCTGTCTGTGGTTGGTATTGTGGTTCTCATCGCTGTCATATGGCTGCTCATTCAATACTTATTCTCGTTGTGGGAGATCTTGGAACGTGTCCGTCGTGTGAATGCGCATACAAATAGGGTCACTATTCGCCTACTACTAATGATGACTCTAACGGCGTTCAACGGACCCAACCGGCCAGCCTCTGAACCGGAGAACGACCGGCCGGTGCCGTCTGCCGTTGCTGCTGACCTTCTCCTTCTAGAATTTATTCTCTATGAGCTTTCTGCAACTTCCTCAGGACTCAGCCTCAGATATGAGTCGATTGAAATCGTTGCGGAGAGCATTGGGATTTCCAACCTTTCCCCTGAGGTTGCTCTTGCTCTCACTCCCGATGTCGAGTACCGGGTCCGTGAAATCATGCAGGAGGCAGTTAAATGCATGCGTCATTCAAAGCGAACTGTTCTCACTTCCATTGATGTGGATAATGCACTTAAATTAAGAAACTTAGAGCCAATATATGGCTTTGCTGCATGCGATAGTTTGCGGTTCAAAAGAGCTGTTGGACACAAGGATCTCTTTTACATTGATGACAAGGATGTGGAGTTAAATAATGTTATTGAGTCACCTTTAGCAAAAGCAACGGTTGATACTTCAGTTGTTGCTCACTGGCTGGCAGTTGAAGGTGTTCAGCCTGCAGTTGCAGAGAACTTGCTGACTGAAGGTGAACCCCATGATGGAAAGAAATCTGACTTGAAGGAGGAAGAACTTCCTTATGATTCCAAAGCACCTACTAAGCATGTGATTTCAAGGGATCTTCAGCTTTACTTTGAGAAAATAACTGGTCTGGTCTTGAACAAGTCTGGGTCAAATCTCTTCAGAGAAGCTTTAAGGAGCTTGTCAGTTGACTCAGGAATTCAACCTTTGCTTCCATACTTCACATGCTTCATTGCCGATGAGTTACACCAATTGATGCCGTCCATCATTACCTGCCTTGTTGCCAAACAATTAGGTAAAAGATTATCTGACAATCATTGGGAGCTTAGAGACTTAGCGGCAAGCCTGGTTTCTTTGATATGCAAAAGATTTGGACATACTTATCACAATATTCAACCTCGTGTTACAAAGACTCTTCTCCATGTTTTCTTGGACCCCTCAAAATTATTGCCTCAGCATTATGGTGCAGTTCAGGGGCTAGCAGATCTTGGTCCCGATGTGGTCCGCCAGCTTATACTACCAAATCTTGAACCGTATATGCAATATCTAGAGATGGAGAAGCAAAAGAATGAAACTAGGAGACATGAAGCTTGGCAAGTTTACAGGACCTTACTGCATGCAGCTGGTAAATGTATGCATGGTTGGCTGAAGGTTTTTCCTCTCTCTCTGTATCCACCAATGTGTAGTACTTCGAAGATAAATGCGAAGATCAATGGGAAAGTCGTGAAGACAATTGCAAATAAACGCAAAGCCAGTGCAGACAACTCCGTGCAGCAACCAGCACTCAAAAAGATGGCAATGGATAGCGCATTGGGTGCAATCCCGATGAACTCCATGATGGTCGATATGCAAGGGGCTGCATCTGGGCTCCCCACACCGCTTGGAGGTTCAAACATCGGCGTCGCTCGAAATTTTCCAAATGAAATGAGGGTAGGGAGGGAAGGTGAACTAGGCTTTAAGGGTTCTACTGCTCTTTCTATAGCATGGAAAGAAGAATTGGATGCTGGGTCATTGCTGACTTCGCTTTTTCCACTTTTTGGGGAAGATCTGTTTCCCTTCATCCCAAAACCCGAGCTATCCTTCTTTCTGTGA 2454 44.46 MEMRVQFAVINASLLVRLMMAPSDIWIKEYNEASKLGDDINGMISERSSFPATGPDSQRHASAIRRKITILGTKVDGLESLLLKLPVKQPLSEKEINRRKDMLAQMRSKVKQMASTLNMSNFANRDSLLGPDMKSADVMSKTAGLDNQGLVEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLAILNKRAKGSCSCFGMLLSVVGIVVLIAVIWLLIQYLFSLWEILERVRRVNAHTNRVTIRLLLMMTLTAFNGPNRPASEPENDRPVPSAVAADLLLLEFILYELSATSSGLSLRYESIEIVAESIGISNLSPEVALALTPDVEYRVREIMQEAVKCMRHSKRTVLTSIDVDNALKLRNLEPIYGFAACDSLRFKRAVGHKDLFYIDDKDVELNNVIESPLAKATVDTSVVAHWLAVEGVQPAVAENLLTEGEPHDGKKSDLKEEELPYDSKAPTKHVISRDLQLYFEKITGLVLNKSGSNLFREALRSLSVDSGIQPLLPYFTCFIADELHQLMPSIITCLVAKQLGKRLSDNHWELRDLAASLVSLICKRFGHTYHNIQPRVTKTLLHVFLDPSKLLPQHYGAVQGLADLGPDVVRQLILPNLEPYMQYLEMEKQKNETRRHEAWQVYRTLLHAAGKCMHGWLKVFPLSLYPPMCSTSKINAKINGKVVKTIANKRKASADNSVQQPALKKMAMDSALGAIPMNSMMVDMQGAASGLPTPLGGSNIGVARNFPNEMRVGREGELGFKGSTALSIAWKEELDAGSLLTSLFPLFGEDLFPFIPKPELSFFL 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6069528 6081572 + ClCG10G004910.2 Cla10g00459 282118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00459 817 MobiDBLite consensus disorder prediction 456 473 - -
Cla10g00459 817 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 147 209 IPR000727 -
Cla10g00459 817 Pfam SNARE domain 184 234 IPR000727 -
Cla10g00459 817 Pfam TAF6 C-terminal HEAT repeat domain 543 630 IPR011442 GO:0006367
Cla10g00459 817 CDD TAF6C 481 661 IPR011442 GO:0006367
Cla10g00459 817 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 536 817 - -
Cla10g00459 817 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 321 535 - -
Cla10g00459 817 Gene3D Histone, subunit A 316 382 IPR009072 GO:0046982
Cla10g00459 817 SUPERFAMILY ARM repeat 509 660 IPR016024 -
Cla10g00459 817 SUPERFAMILY SNARE fusion complex 147 208 - -
Cla10g00459 817 SUPERFAMILY Histone-fold 317 391 IPR009072 GO:0046982
Cla10g00459 817 MobiDBLite consensus disorder prediction 454 473 - -
Cla10g00459 817 CDD SNARE_Qc 152 207 - -
Cla10g00459 817 Gene3D - 149 211 - -
Cla10g00459 817 SMART TAF_cls 317 383 IPR004823 -
Cla10g00459 817 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 536 817 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Cla10g00459 817 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 321 535 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Cla10g00459 817 Pfam TATA box binding protein associated factor (TAF) 321 381 IPR004823 -
Cla10g00459 817 Gene3D - 533 649 IPR046344 GO:0006367
Cla10g00459 817 Gene3D - 480 532 IPR046344 GO:0006367
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01336 Cla-Chr9:21462579 Cla10g00459 Cla-Chr10:6069528 7.92E-13 dispersed
Cla09g01036 Cla-Chr9:10956463 Cla10g00459 Cla-Chr10:6069528 6.30E-117 transposed
Cla10g00459 Cla-Chr10:6069528 Cla02g00240 Cla-Chr2:2446423 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00459 K03131 - csv:101204807 883.248