Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g00459 | ATGGAGATGAGAGTTCAATTTGCTGTTATTAATGCGTCTCTGCTTGTCAGGTTGATGATGGCACCTTCTGATATATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGATTCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTGGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTGTCTGAAAAGGAGATAAATCGACGTAAAGACATGCTTGCTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACAGAGACAGTTTGCTTGGCCCAGATATGAAATCGGCGGATGTAATGAGCAAGACTGCTGGACTAGACAATCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCTTTAGCAGTTAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTGGACCAACATGTTGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGCAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGGATGCTTCTGTCTGTGGTTGGTATTGTGGTTCTCATCGCTGTCATATGGCTGCTCATTCAATACTTATTCTCGTTGTGGGAGATCTTGGAACGTGTCCGTCGTGTGAATGCGCATACAAATAGGGTCACTATTCGCCTACTACTAATGATGACTCTAACGGCGTTCAACGGACCCAACCGGCCAGCCTCTGAACCGGAGAACGACCGGCCGGTGCCGTCTGCCGTTGCTGCTGACCTTCTCCTTCTAGAATTTATTCTCTATGAGCTTTCTGCAACTTCCTCAGGACTCAGCCTCAGATATGAGTCGATTGAAATCGTTGCGGAGAGCATTGGGATTTCCAACCTTTCCCCTGAGGTTGCTCTTGCTCTCACTCCCGATGTCGAGTACCGGGTCCGTGAAATCATGCAGGAGGCAGTTAAATGCATGCGTCATTCAAAGCGAACTGTTCTCACTTCCATTGATGTGGATAATGCACTTAAATTAAGAAACTTAGAGCCAATATATGGCTTTGCTGCATGCGATAGTTTGCGGTTCAAAAGAGCTGTTGGACACAAGGATCTCTTTTACATTGATGACAAGGATGTGGAGTTAAATAATGTTATTGAGTCACCTTTAGCAAAAGCAACGGTTGATACTTCAGTTGTTGCTCACTGGCTGGCAGTTGAAGGTGTTCAGCCTGCAGTTGCAGAGAACTTGCTGACTGAAGGTGAACCCCATGATGGAAAGAAATCTGACTTGAAGGAGGAAGAACTTCCTTATGATTCCAAAGCACCTACTAAGCATGTGATTTCAAGGGATCTTCAGCTTTACTTTGAGAAAATAACTGGTCTGGTCTTGAACAAGTCTGGGTCAAATCTCTTCAGAGAAGCTTTAAGGAGCTTGTCAGTTGACTCAGGAATTCAACCTTTGCTTCCATACTTCACATGCTTCATTGCCGATGAGTTACACCAATTGATGCCGTCCATCATTACCTGCCTTGTTGCCAAACAATTAGGTAAAAGATTATCTGACAATCATTGGGAGCTTAGAGACTTAGCGGCAAGCCTGGTTTCTTTGATATGCAAAAGATTTGGACATACTTATCACAATATTCAACCTCGTGTTACAAAGACTCTTCTCCATGTTTTCTTGGACCCCTCAAAATTATTGCCTCAGCATTATGGTGCAGTTCAGGGGCTAGCAGATCTTGGTCCCGATGTGGTCCGCCAGCTTATACTACCAAATCTTGAACCGTATATGCAATATCTAGAGATGGAGAAGCAAAAGAATGAAACTAGGAGACATGAAGCTTGGCAAGTTTACAGGACCTTACTGCATGCAGCTGGTAAATGTATGCATGGTTGGCTGAAGGTTTTTCCTCTCTCTCTGTATCCACCAATGTGTAGTACTTCGAAGATAAATGCGAAGATCAATGGGAAAGTCGTGAAGACAATTGCAAATAAACGCAAAGCCAGTGCAGACAACTCCGTGCAGCAACCAGCACTCAAAAAGATGGCAATGGATAGCGCATTGGGTGCAATCCCGATGAACTCCATGATGGTCGATATGCAAGGGGCTGCATCTGGGCTCCCCACACCGCTTGGAGGTTCAAACATCGGCGTCGCTCGAAATTTTCCAAATGAAATGAGGGTAGGGAGGGAAGGTGAACTAGGCTTTAAGGGTTCTACTGCTCTTTCTATAGCATGGAAAGAAGAATTGGATGCTGGGTCATTGCTGACTTCGCTTTTTCCACTTTTTGGGGAAGATCTGTTTCCCTTCATCCCAAAACCCGAGCTATCCTTCTTTCTGTGA | 2454 | 44.46 | MEMRVQFAVINASLLVRLMMAPSDIWIKEYNEASKLGDDINGMISERSSFPATGPDSQRHASAIRRKITILGTKVDGLESLLLKLPVKQPLSEKEINRRKDMLAQMRSKVKQMASTLNMSNFANRDSLLGPDMKSADVMSKTAGLDNQGLVEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLAILNKRAKGSCSCFGMLLSVVGIVVLIAVIWLLIQYLFSLWEILERVRRVNAHTNRVTIRLLLMMTLTAFNGPNRPASEPENDRPVPSAVAADLLLLEFILYELSATSSGLSLRYESIEIVAESIGISNLSPEVALALTPDVEYRVREIMQEAVKCMRHSKRTVLTSIDVDNALKLRNLEPIYGFAACDSLRFKRAVGHKDLFYIDDKDVELNNVIESPLAKATVDTSVVAHWLAVEGVQPAVAENLLTEGEPHDGKKSDLKEEELPYDSKAPTKHVISRDLQLYFEKITGLVLNKSGSNLFREALRSLSVDSGIQPLLPYFTCFIADELHQLMPSIITCLVAKQLGKRLSDNHWELRDLAASLVSLICKRFGHTYHNIQPRVTKTLLHVFLDPSKLLPQHYGAVQGLADLGPDVVRQLILPNLEPYMQYLEMEKQKNETRRHEAWQVYRTLLHAAGKCMHGWLKVFPLSLYPPMCSTSKINAKINGKVVKTIANKRKASADNSVQQPALKKMAMDSALGAIPMNSMMVDMQGAASGLPTPLGGSNIGVARNFPNEMRVGREGELGFKGSTALSIAWKEELDAGSLLTSLFPLFGEDLFPFIPKPELSFFL | 817 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6069528 | 6081572 | + | ClCG10G004910.2 | Cla10g00459 | 282118 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g00459 | 817 | MobiDBLite | consensus disorder prediction | 456 | 473 | - | - | |
Cla10g00459 | 817 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 147 | 209 | IPR000727 | - | |
Cla10g00459 | 817 | Pfam | SNARE domain | 184 | 234 | IPR000727 | - | |
Cla10g00459 | 817 | Pfam | TAF6 C-terminal HEAT repeat domain | 543 | 630 | IPR011442 | GO:0006367 | |
Cla10g00459 | 817 | CDD | TAF6C | 481 | 661 | IPR011442 | GO:0006367 | |
Cla10g00459 | 817 | PANTHER | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 | 536 | 817 | - | - | |
Cla10g00459 | 817 | PANTHER | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 | 321 | 535 | - | - | |
Cla10g00459 | 817 | Gene3D | Histone, subunit A | 316 | 382 | IPR009072 | GO:0046982 | |
Cla10g00459 | 817 | SUPERFAMILY | ARM repeat | 509 | 660 | IPR016024 | - | |
Cla10g00459 | 817 | SUPERFAMILY | SNARE fusion complex | 147 | 208 | - | - | |
Cla10g00459 | 817 | SUPERFAMILY | Histone-fold | 317 | 391 | IPR009072 | GO:0046982 | |
Cla10g00459 | 817 | MobiDBLite | consensus disorder prediction | 454 | 473 | - | - | |
Cla10g00459 | 817 | CDD | SNARE_Qc | 152 | 207 | - | - | |
Cla10g00459 | 817 | Gene3D | - | 149 | 211 | - | - | |
Cla10g00459 | 817 | SMART | TAF_cls | 317 | 383 | IPR004823 | - | |
Cla10g00459 | 817 | PANTHER | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 | 536 | 817 | IPR037796 | GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695 | |
Cla10g00459 | 817 | PANTHER | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 | 321 | 535 | IPR037796 | GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695 | |
Cla10g00459 | 817 | Pfam | TATA box binding protein associated factor (TAF) | 321 | 381 | IPR004823 | - | |
Cla10g00459 | 817 | Gene3D | - | 533 | 649 | IPR046344 | GO:0006367 | |
Cla10g00459 | 817 | Gene3D | - | 480 | 532 | IPR046344 | GO:0006367 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g01336 | Cla-Chr9:21462579 | Cla10g00459 | Cla-Chr10:6069528 | 7.92E-13 | dispersed | |
Cla09g01036 | Cla-Chr9:10956463 | Cla10g00459 | Cla-Chr10:6069528 | 6.30E-117 | transposed | |
Cla10g00459 | Cla-Chr10:6069528 | Cla02g00240 | Cla-Chr2:2446423 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g00459 | K03131 | - | csv:101204807 | 883.248 |