Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00460 ATGGCAACTTTTCAGCTCACAAATCTATCATCTTCTTCAATTCCCCCTCAGTTTCATCTTAACACATCCTTCTTTCCCTCCAACTTTCCCTGGACTTGTTCCTCTTCTAATGCCAAGCGGAAATTTCCGTCTCGAAGACACCATCTTGGTGTTGTGGGCTGCTCATTTTCCCCTATGGAGTCCGCTAAGATTAAGGTTGTGGGAGTTGGTGGAGGCGGCAACAATGCCGTTAATCGCATGATTGGCAGCGGTTTGAAGGGTGTTGATTTCTATGCTATAAACACGGATTCTCAAGCTCTACTACAGTCTGCTGCTGAGAATCCACTTCAAATTGGAGAGCTTCTGACTCGCGGGCTAGGTCAGGAACTTCGCCTTTTCCTTTGGTTGTTTTGGCCTTTTGGGAATGTGTTCTGTACTGGTGGGAATCCACTTTTAGGGGAACAAGCAGCAGAAGAATCAAAAGAAGCGATAGCTGGTGCTCTCAAGGGCTCTGATCTTGTATTTATAACGGCAGGTATGGGTGGAGGCACTGGGTCTGGTGCAGCCCCTGTCGTTGCTCAGATTTCGAAGGAGGCAGGTTATCTTACTGTTGGTGTTGTTACTTTTCCATTCAGTTTTGAAGGAAGAAAACGATCCTTGCAGGCACTGGAGGCCATTGAAAAGTTGCAGAAAAATGTTGACACTCTTATAGTGATTCCCAATGATCGATTGCTTGATATTGCTGATGAACAGACACCTCTTCAAGATGCTTTCCTTCTTGCTGATGATGTCCTACGTCAAGGAGTACAAGGAATTTCTGATATAATTACGATTCCAGGTCTGGTCAATGTGGATTTTGCTGACGTAAAAGCCGTAATGAAAGACTCAGGAACTGCAATGCTCGGAGTTGGTGTTTCCTCTAGCAAAAATCGTGCAGAAGAGGCAGCTGAGCAAGCAACTTTGGCCCCGTTGATTGGATCCTCAATTCAGTCAGCTACAGGAGTAGTATATAACATTACTGGAGGAAAGGACATTACTCTCCAGGAAGTGAACAGAGTGTCTCAGGTTGTGACAAGTTTGGCTGATCCATCTGCAAACATAATATTTGGAGCAGTTGTGGATGATAGATACAGTGGAGAAATCCATGTAACTATAATTGCAACAGGGTTCTCTCAATCCTTTCAGAAGACATTGTTAGCTGACCCCAGGGCTTCAAAACTTATTGATAAAGTGACTGGAGGAGGTCAAGAAAAAAGTAGCAAGGCTTCTTCAACCCTCCCTCTTAACTTATCGCCTGCTGCTTCACCGACGCTTCCTAATCGAGGTCGAAGGCTCTTCTTTTAG 1323 44.9 MATFQLTNLSSSSIPPQFHLNTSFFPSNFPWTCSSSNAKRKFPSRRHHLGVVGCSFSPMESAKIKVVGVGGGGNNAVNRMIGSGLKGVDFYAINTDSQALLQSAAENPLQIGELLTRGLGQELRLFLWLFWPFGNVFCTGGNPLLGEQAAEESKEAIAGALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTFPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYSGEIHVTIIATGFSQSFQKTLLADPRASKLIDKVTGGGQEKSSKASSTLPLNLSPAASPTLPNRGRRLFF 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6082601 6087614 - ClCG10G004930.2 Cla10g00460 282119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00460 440 SMART Tubulin_C_4 275 392 IPR018316 -
Cla10g00460 440 ProSitePatterns FtsZ protein signature 2. 165 186 IPR020805 GO:0005525
Cla10g00460 440 Gene3D - 289 394 IPR037103 -
Cla10g00460 440 Pfam Tubulin/FtsZ family, GTPase domain 63 241 IPR003008 GO:0005525
Cla10g00460 440 PRINTS Cell division protein FtsZ signature 280 301 IPR003008 GO:0005525
Cla10g00460 440 PRINTS Cell division protein FtsZ signature 194 215 IPR003008 GO:0005525
Cla10g00460 440 PRINTS Cell division protein FtsZ signature 257 279 IPR003008 GO:0005525
Cla10g00460 440 PRINTS Cell division protein FtsZ signature 166 186 IPR003008 GO:0005525
Cla10g00460 440 MobiDBLite consensus disorder prediction 409 429 - -
Cla10g00460 440 SUPERFAMILY Tubulin nucleotide-binding domain-like 63 273 IPR036525 -
Cla10g00460 440 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 174 180 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cla10g00460 440 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 5 121 IPR045061 GO:0003924|GO:0005525
Cla10g00460 440 SMART Tubulin_4 63 273 IPR003008 GO:0005525
Cla10g00460 440 TIGRFAM ftsZ: cell division protein FtsZ 139 390 IPR000158 GO:0003924|GO:0005525
Cla10g00460 440 PANTHER BNAA02G09160D PROTEIN 5 121 - -
Cla10g00460 440 PANTHER BNAA02G09160D PROTEIN 137 440 - -
Cla10g00460 440 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 137 440 IPR045061 GO:0003924|GO:0005525
Cla10g00460 440 CDD FtsZ_type1 79 382 IPR000158 GO:0003924|GO:0005525
Cla10g00460 440 SUPERFAMILY Tubulin C-terminal domain-like 275 390 IPR008280 -
Cla10g00460 440 Gene3D Tubulin/FtsZ, GTPase domain 56 288 IPR036525 -
Cla10g00460 440 Hamap Cell division protein FtsZ [ftsZ]. 59 406 IPR000158 GO:0003924|GO:0005525
Cla10g00460 440 MobiDBLite consensus disorder prediction 404 440 - -
Cla10g00460 440 Pfam FtsZ family, C-terminal domain 290 383 IPR024757 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00460 K03531 ftsZ; cell division protein FtsZ - csv:101222908 730.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00460 Cla-Chr10:6082601 Cla10g01805 Cla-Chr10:33962465 4.78E-107 dispersed
Cla10g00460 Cla-Chr10:6082601 Cla04g00987 Cla-Chr4:24984377 4.34E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g585 . . . . . . Bma10g00581 Bma13g01095 . Cmo06g00884 . . . . . . . . . . . . . . Cla10g00460 Cam10g0446 Cec10g0469 Cco10g0457 Clacu10g0467 Cmu10g1296 Cre10g0701 Cone6ag0040 Cone9ag0046 . . . Csa03g00458 . Cme06g02820 Blo07g00880 Blo10g00853 . Bda12g00939 . . . . . . . . . . . . . Bhi11g00549 . . . . Mch10g1390 . . . . . . . . Lsi05g00545 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00460 Cla_Chr10 FPKM 1.66786 2.033564 1.077433 1.471166 0.854207 0.711857 1.068371 6.504138 6.643404 6.373666