Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00470 AAAGTAGTAACCAAACAGCACCGCTCCCTTTCTTTGTCGTCAAAAATCGTTCAGATCGGCCACGGCCACAGCCACAGGCCCTTCTTTCCTCCCCACAAAAACTCAACGCCCTTCCCTTTCTTTCACTTTTATTACTCTTCCCTCTCTTTACTTACCCGCCAAAACCCTCTCTTTCTTACGTCTCAATTTTCAATTTTTGAAATTCCCTCTTCCCCCTTCCCCTTCCCCCAACCTACGACCTCGTTTTCCTCGCCTGCCTCTTCTCCCATGGCCGAACCCATGGAGGAAAACGCGGTTGTTGATGCCGAACCCACTGCCGACAAGAGGCCTGTTGAGAATCATGGGGACGATGGACTTGCGGAGCCTCACTTGAGGAAGAAGCCCCGGAATGGTTGCGACTTGGGTCCGAATCTCAGAAGGGTCGCTGAGATTGTGTTGGTTATGTCCACAATGACGGCGTTGCGTGCTGGGAAGAAGCCGAGTGATGCTGAGGTTGAATTAATGGCTGAGGCTAGGGCTAAGCTGGCTCAGATTTGTGAAGGGTTGGCTCCTAAGGATATTGTGGGAAGGGAAGGTATTAGCTCTCTGATTGAAGATTTGGGGCTGCATGGCAATGCTAGGGATCAGAAGTTAGGGTTGCGGGGTACCAGGTTGACGATAGCGGAGAAGTTGGCACAGGCAAAGAAGAAGATGGAAGATTCCAAGAAATATGTCCCACCTCCAGGTTATGGATCTCATCCAACCCAAAAAAACTTCAGTTCATCAGTTGAGAGCCGTGGGCCATTGCCTACAGTACGGATGTTTCCTTCAGACAAATCAAGTACTGTCCCAACTTCTGTGGGAAACACTGCGGGTACTCTGCCTTCAGGTCATGTTTCTGTTGCTGGTTCTACATCTATACAGGTTCAAGCACAACCACCGAGCAATGAAGTCAGGGCACATATTATTTCAAGTGGATATCCTATTGGTCATCAAGGAAGGGATTCTTCTTCACTCTTGCATGGCATTGAAAGACCATTAAATGGGACATATGGATCCCCAATGCAAGTTAACTCTTTGGCGAATCATCCTCTGGTGAGTGCTCCAACCTGGTCTGCTCAAACTCAATCCACCTTGTCGGCTAAAGGTGGGCCAGAGCACAAGTTTGCCAATCATTCTGCTGTTAATGCTCAGGGAACCACAGACTCAAGAGCATTAAGATCGTCTTCTCAAGCAGCAAGGGACCAGAGCTTTAGACCTCCTATTTCTCAAACTGGGACAGGGAATATTACTGGTTTGCAGCCGCCATTACAGAGCATGAATTTTGTGCAAGGACCTTCACTTTCTAATAACCATAATGAAATTGTCAAAATTATCCAGAAGCTCTTACAGCCACAACTTCCCGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTAACTTGCCAAACTTGTCAAGCTACCATTAATGAGATTGATACTGTACTTATATGTGATGCTTGTGAGAAAGGATATCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCTAGAGGTGAATGGCACTGCCCTAGATGTTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAACCCACCGCCAAAGTTATCGGTCAATACCAGTGGAACTCAGCCACAAGAGAAGAGATCAGGAGCCATAGAACAGAAGGCCAGTGCTGGTCAGCTGAAGTTAGTTTCTAATGGAGGTTCAGATTTGCCAAGTCCTCAGCCTGCTGACTATGGAAGCAATAACAATGAATCATCTGGTACCAAAATTCCAAATGTGGAGATTCATGGAAATAGTTTTTTACCAATTAGGAATGACATAGATGAGAAACCAACCTCTTCCACTTCCTTGAATACCCCTGCCAAATCCTTGGGGCTAGTTTCTGAACCCTCTTCTGCTGAGTTATCAAGTGAAATATCTGCTCAGCACATTAAAAGTTCTCAAGCATCAATAGGTGAAGATAAATCCTCAGCGAAAGCAGAGCCTCCAGAAGAATGCCGAACAACGGCTGACAATTCTAGTAACCCTAAACCCCCTGACATTTCTCAAATTGTTGATCAGCAAATGGTTTCTGAAGGTCCAGAGCTACCCTCCTCAACGGCAAGTGCTCATGATACTTCAAATGTGAAGAAAGATGGCCATGAAGTTCTGCAGGAGAATGATGTTGAAAATTTTGAAGCTAGCATCATAAATAGAGAGCAGGCTGAGACTTCTTCCGATGACTTGCATAATGTTGAATGGATTGGAAACCCACATCAGATTTCAGATATGAAGGCATATTACAAATCCTGTCGAGTTGATGGTGTTACATATAAATCCTTCAGCCATGAATATGAAAGTGGGTTGAACTTGGCTATTCTTAAGAAGTGTTACTTTTATGAGGACTTGCCAAAGGAAGTTGCCCATCTCCACCCGTGCTCCCCTGAACAAGACGAGGTATATACATCCGATGGCCATATTTGTTTAGATGTGGGCTTAATTCGAGGCCCATGCGAAGTTCTTCCTTCTGCGAAGTATCAAGAAGAACTTGGAAGACGAAAACAATTGGGTCTTGGGGCAGATAATGGAATAAAACCAATTTTCCTGTGCAAATGGTTTTATACTGAAGCTAACAAGGAATTTGTACCTTTTACTGGCACAATCTGTGAAAACTTCTCATTGACGCAGAGTCCAACCCTTGCAAGGACAAGTTGA 2745 44.95 KVVTKQHRSLSLSSKIVQIGHGHSHRPFFPPHKNSTPFPFFHFYYSSLSLLTRQNPLFLTSQFSIFEIPSSPFPFPQPTTSFSSPASSPMAEPMEENAVVDAEPTADKRPVENHGDDGLAEPHLRKKPRNGCDLGPNLRRVAEIVLVMSTMTALRAGKKPSDAEVELMAEARAKLAQICEGLAPKDIVGREGISSLIEDLGLHGNARDQKLGLRGTRLTIAEKLAQAKKKMEDSKKYVPPPGYGSHPTQKNFSSSVESRGPLPTVRMFPSDKSSTVPTSVGNTAGTLPSGHVSVAGSTSIQVQAQPPSNEVRAHIISSGYPIGHQGRDSSSLLHGIERPLNGTYGSPMQVNSLANHPLVSAPTWSAQTQSTLSAKGGPEHKFANHSAVNAQGTTDSRALRSSSQAARDQSFRPPISQTGTGNITGLQPPLQSMNFVQGPSLSNNHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQATINEIDTVLICDACEKGYHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGTQPQEKRSGAIEQKASAGQLKLVSNGGSDLPSPQPADYGSNNNESSGTKIPNVEIHGNSFLPIRNDIDEKPTSSTSLNTPAKSLGLVSEPSSAELSSEISAQHIKSSQASIGEDKSSAKAEPPEECRTTADNSSNPKPPDISQIVDQQMVSEGPELPSSTASAHDTSNVKKDGHEVLQENDVENFEASIINREQAETSSDDLHNVEWIGNPHQISDMKAYYKSCRVDGVTYKSFSHEYESGLNLAILKKCYFYEDLPKEVAHLHPCSPEQDEVYTSDGHICLDVGLIRGPCEVLPSAKYQEELGRRKQLGLGADNGIKPIFLCKWFYTEANKEFVPFTGTICENFSLTQSPTLARTS 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6213591 6224171 - ClCG10G005040.1 Cla10g00470 282129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00470 914 MobiDBLite consensus disorder prediction 684 698 - -
Cla10g00470 914 Gene3D - 802 911 IPR043151 -
Cla10g00470 914 ProSiteProfiles Zinc finger PHD-type profile. 477 529 IPR019787 -
Cla10g00470 914 SUPERFAMILY FYVE/PHD zinc finger 470 536 IPR011011 -
Cla10g00470 914 MobiDBLite consensus disorder prediction 77 96 - -
Cla10g00470 914 MobiDBLite consensus disorder prediction 246 260 - -
Cla10g00470 914 MobiDBLite consensus disorder prediction 534 698 - -
Cla10g00470 914 MobiDBLite consensus disorder prediction 105 132 - -
Cla10g00470 914 MobiDBLite consensus disorder prediction 388 428 - -
Cla10g00470 914 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 541 IPR013083 -
Cla10g00470 914 MobiDBLite consensus disorder prediction 575 610 - -
Cla10g00470 914 MobiDBLite consensus disorder prediction 625 671 - -
Cla10g00470 914 ProSitePatterns Zinc finger PHD-type signature. 480 526 IPR019786 -
Cla10g00470 914 MobiDBLite consensus disorder prediction 548 566 - -
Cla10g00470 914 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 98 895 - -
Cla10g00470 914 MobiDBLite consensus disorder prediction 229 278 - -
Cla10g00470 914 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 98 895 - -
Cla10g00470 914 SMART PHD_3 479 527 IPR001965 -
Cla10g00470 914 Pfam PHD-finger 480 527 IPR019787 -
Cla10g00470 914 ProSiteProfiles BAH domain profile. 725 895 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00470 - - - csv:101222588 1388.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00470 Cla-Chr10:6213591 Cla02g00064 Cla-Chr2:635635 5.17E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61846 PF00628 PHD 1.00E-08 CL0390 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00470 Cla_Chr10 FPKM 2.089593 2.211311 7.342527 6.648111 9.197309 6.867915 9.519062 3.823863 3.50491 3.890232