Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00480 ATGTTCGTCACGAAGCTTTTCTCACGCGCATCCCGCGGCATTTTCCGCAGCTCGCTGCTCTCCTCGGCCTCCCAATCCGATAAAACCGTTCACTTGCCAATTCTCACAAATCGCTTACACTATCTTGCTAACGTATCAGCCAACAAGGAATCAGCATTACATCATTCATTTCTCCTTCAAAAATTTGGATTATCAACATCTGCATCCCCTGAGACTTCTAATAAGGAAAATGGCAATACAGTACCAAGTGATGGCGGCTCTAAAACTGATGCAGAGCCAACGGCTGAAACTAATGGTCAAACCGGGGAATCAGGTTTAATATCCGGATATGCTGAGAGCGATGACAATCTTTCCATGGATGATCTGGTGAAAGTTGTAGCTGAGAAGGAAGAGCTTTTGAAATTAAAGCACAAAGAGATTGAACAAATGCAAGATAAAGTTGTTCGCACTTATGCAGAGATGGAGAATGTGATGGCCAGAACAAGGCGTGAAGCTGAGAATTCAAAGAAGTTTGCTGTACAGAACTTTGCAAAGAGTTTACTGGACGTTGCAGACAATCTAGGACGGGCTTCATCTGTTGTCAAGGAAAGTTATTCAAAGATTGATTCAACTAAGGACTCTGCAGGTGCAGTACCCTTATTGAAAACCCTTCTTGAAGGTGTTGAAATGACTGAGAAACAGTTGTCTGAGGTGTTAAAGAAGTTTGGAGTGGAAATATTTGATCCTACAAATGAGCCATTTGATCCACATAGGCACAATGCAGTTTTTCAAGTACCAGATGGTTCTAAGCCTCCTGGAACCGTTGCAGCTGTATTGAAGAAAGGATACATGCTTTATGAGCGAGTACTTCGACCTGCCGAAGTTGGTGTTACTACAGCCGTGGAGAATGAGGACGGTGCAACCAATGAGGCAACTGAGAAGGGATCTCAAGGTTGA 936 43.48 MFVTKLFSRASRGIFRSSLLSSASQSDKTVHLPILTNRLHYLANVSANKESALHHSFLLQKFGLSTSASPETSNKENGNTVPSDGGSKTDAEPTAETNGQTGESGLISGYAESDDNLSMDDLVKVVAEKEELLKLKHKEIEQMQDKVVRTYAEMENVMARTRREAENSKKFAVQNFAKSLLDVADNLGRASSVVKESYSKIDSTKDSAGAVPLLKTLLEGVEMTEKQLSEVLKKFGVEIFDPTNEPFDPHRHNAVFQVPDGSKPPGTVAAVLKKGYMLYERVLRPAEVGVTTAVENEDGATNEATEKGSQG 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6305701 6310651 - ClCG10G005130.1 Cla10g00480 282139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00480 311 Gene3D - 122 235 IPR013805 -
Cla10g00480 311 PANTHER GRPE PROTEIN HOMOLOG 1 295 - -
Cla10g00480 311 Hamap Protein GrpE [grpE]. 73 292 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla10g00480 311 Gene3D Head domain of nucleotide exchange factor GrpE 236 291 IPR009012 GO:0006457
Cla10g00480 311 ProSitePatterns grpE protein signature. 247 290 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla10g00480 311 Coils Coil 126 160 - -
Cla10g00480 311 PANTHER GRPE PROTEIN 1 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla10g00480 311 MobiDBLite consensus disorder prediction 67 106 - -
Cla10g00480 311 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 237 291 IPR009012 GO:0006457
Cla10g00480 311 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 127 236 IPR013805 -
Cla10g00480 311 Pfam GrpE 126 291 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla10g00480 311 PRINTS GrpE protein signature 148 164 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla10g00480 311 PRINTS GrpE protein signature 244 259 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla10g00480 311 PRINTS GrpE protein signature 271 290 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cla10g00480 311 CDD GrpE 141 290 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00480 K03687 GRPE; molecular chaperone GrpE - csv:101219271 494.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla09g01032 Cla10g00480 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01087 Cla-Chr8:23625256 Cla10g00480 Cla-Chr10:6305701 1.38E-10 dispersed
Cla09g01032 Cla-Chr9:10902276 Cla10g00480 Cla-Chr10:6305701 4.80E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g571 . . . . Bpe09g00153 . Bma10g00576 Bma13g01078 Cmo16g00946 Cmo06g00893 . Cma09g00968 . Car09g00883 Sed04g3701 Cpe06g00783 . Bhi09g01692 Tan01g3121 Cmetu01g0613 . Hepe01g1250 Mch11g1215 . Cla10g00480 Cam10g0467 Cec10g0487 Cco10g0475 Clacu10g0487 Cmu10g1315 Cre10g0720 Cone6ag0044 Cone9ag0052 Cone14ag1179 Cone15ag1191 Lsi02g01882 Csa03g00481 . Cme06g02842 Blo07g00884 Blo10g00848 Bda05g00699 Bda12g00933 . Bpe03g00773 . . Sed08g2981 . Cmo09g00969 . Cma16g00911 . Car16g00885 Cpe14g00736 . Bhi11g00582 Tan01g1745 Cmetu06g0127 . Hepe06g0017 . . Cla09g01032 Cam09g1087 Cec09g1086 Cco09g1107 . . Cre09g1052 Lsi05g00568 . Chy06g01841 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002397 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 2 2 4 2 2 1 1 2 2 2 2 3 2 3 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00480 Cla_Chr10 FPKM 58.661179 62.241871 27.449755 28.176212 14.223176 14.68868 12.670785 45.962532 49.116859 42.815937