Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00484 ATGGAGGGGCCAGTCGGTGGAGGTGGTGGCATCCAGTTTTTCCTCTTCACGGACCTGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCAAACAAACATTGAATTTGAATCTGCCATTTCTGCAATCTCACGACAAAGAATCTCTCTCCAATTTCCCTTCTCATCAATTTCTTCTTCTCATCAATTTCTTCTTCTTCATCCTTCGATTTGACGCCAAAATCTTGGTAGTTATGAGGAGAGGGAGAGGGGCGGCGGTGCCGGTACCGGCGGCGCGTGAACCACCTACCACCGGATCGGAACGGAGATACAGAGGAGTCCGTAAAAGGCCATGGGGAAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACAAGAGTTTGGTTAGGGACCTTTGATTCCGCCGAAGACGCCGCCCGTGCTTACGATAACGCCGCCATAACCCTCCGAGGCCCTAAAGCTAAAACCAATTTCCCTCTTCCTAATCCCACTTCGTTTTTCGATTACCCTCCTTTCCCTCCTCATCCCGTCAACGCTCCAGATCCCTTCCCCGATTCCCGATTTCAGATTAACCCTCATAGACCTACTTCCAGCAGTTTGAGCTCCACCGTCGAATCCTTCAGCGGTCCTCGCCCTCCCTCCGCCGCCGCTACTACGACCACTTCCCCCTCCCGCCGTTACCCACGTACACCGCCTCTCCTCCCTGAAGATTGCCATAGCGATTGTGATTCTTCCTCTTCCGTCATCGACGATGGCGACGACATCGCTTCCTCCTCCATCCTTCCTCGGAAACCACCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTCTTGATTTTACCGCCGATGATCTTCGATGTACCGCTTTGTGCCTCTGA 891 52.75 MEGPVGGGGGIQFFLFTDLTLSLSLSLSLSLSSKQTLNLNLPFLQSHDKESLSNFPSHQFLLLINFFFFILRFDAKILVVMRRGRGAAVPVPAAREPPTTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPNPTSFFDYPPFPPHPVNAPDPFPDSRFQINPHRPTSSSLSSTVESFSGPRPPSAAATTTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSILPRKPPLPFDLNIPPSDLLDFTADDLRCTALCL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6360105 6361954 - ClCG10G005170.2 Cla10g00484 282143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00484 296 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 81 274 - -
Cla10g00484 296 MobiDBLite consensus disorder prediction 193 230 - -
Cla10g00484 296 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Cla10g00484 296 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Cla10g00484 296 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Cla10g00484 296 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Cla10g00484 296 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 81 274 - -
Cla10g00484 296 MobiDBLite consensus disorder prediction 172 249 - -
Cla10g00484 296 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Cla10g00484 296 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Cla10g00484 296 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Cla10g00484 296 SUPERFAMILY DNA-binding domain 105 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00284 Cla-Chr9:2761320 Cla10g00484 Cla-Chr10:6360105 7.55E-25 dispersed
Cla09g02032 Cla-Chr9:37908846 Cla10g00484 Cla-Chr10:6360105 7.79E-48 dispersed
Cla10g00484 Cla-Chr10:6360105 Cla11g01739 Cla-Chr11:31001588 1.85E-28 dispersed
Cla10g00484 Cla-Chr10:6360105 Cla02g01774 Cla-Chr2:32782876 9.18E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61847 PF00847 AP2 8.50E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00484 K09286 - csv:101219993 295.049