Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00489 ATGGCGTCATCTACCACTGAATCATCTCGTATTCTTCATGAAATCGAGACCTTGAAATCTGCCAAGTCCGACTTAGAACGTCGTATTTCAGCTCTTGAATCTCAGCTCCATGACCTCAATCATCCCCACAACAATGGTGTTTGTAATGCCTCTTCCACTTCACCATCCGCCTTTCCTCATGGTCTCTCCCCTGATATGATTTACAGATATAGTCGCCACCTCCTTCTTCCTTCCTTTGGAGTCCAAGGACAATTGAGGCTTTCCAAGTCTTCAATTTTAGTTGTTGGAGCGGGAGGGTTGGGTTCGCCAGCTTTATTGTATCTTGCAGCTTCTGGTGTTGGTCGTCTGGGAATTGTTGACCATGATGTAGTTGAGCTAAATAACATGCATCGACAGATCATCCATACTGAGGCATATATTGGCCGGTCGAAAGTAGAATCTGCTGCTGCTACATGTCGCTCGATCAACTCTACTGTTGAGATTGTTGAGCACAAAGAAGCTCTTCGCACATCAAACGCTTTAGAAATTTTTAGCAAATATGATATTATAGTAGATGCCACAGATAATGCTCCTAGCCGGTACATGATTAGTGATTGTTGTGTGGTGCTGGGAAAGCCTCTTGTGTCTGGTGCAGCACTAGGTTTGGAGGGGCAGTTTACAATTATAATGGAGGTCCGTGCTACCGATGCCTATTTCCAACTCCTCCACCGACAACAGCGTGCCAAAGTTCCTGGTATCATTGGCTGTCTTCAAGCCTTGGAGGCCATAAAACTTTCAAGTGCGGTTGGTGAGCCACTTTCTGGACGGATGCTTCTGTTTGATGCCTTGGCAGCAAGGATCCGAATTGTCAAGATTCGTGGAAGGTCGTTGCAATGTGAAGTATGTGGAGAAAATTCTAAGTTCAAAGCAGCACAATTTCAAGAATTTGACTATGAAAAGTTCACTCAGTCTCCACTATCTACGTCTCCTCTGAGGTTAAAACTACTAGAGCCAAACTCAAGAATAAGTGCTAAAGAGTATGGAGATCGACTTCGTAATGGCGAATCACACGTGCTCGTGGATGTCCGTCCCGAGCACCATTTCAAGATTGTTTCTCTTCCCAACTCCCTTAACATCCCGCTGGCAAGTTTGGACGGAAGGCTGGAAGAAGTTGTTTCGGCTTTGAAGGAAGAGGAACATAAACAGAGTTCAGAGTCCTCCGGTGCTGATGTTCAATTATATGTTGTTTGTAGGAGAGGGAATGATTCTCAAAGAGCTGTCAAGTATCTCCAGGAGAAAGGATTCCCTTCAGCTAAGGATATCATTGGTGGATTGGAGGGTTGGGCCCATGAGGATATTTTTGACATTAAAATGGCTGCTTCATCATCCCTTATGGCACACTCTTTGCATGCGCATGCGTCCACTGAAACGGCCATAAAATGCTGTAAGGGCTATATGTACGGCAACTCCCGGATTGGATACTCCAAGTCCAAGTTCCTAACAAGTCCTAAATTTTCACATGACGAGAATTCATCAAAATGGGAATGCATTGAGAAACGTCCAATGAGAAATGAAATCCGGTGCCGAGCTGTGGAAATTGAGAATTCACTTTCTCCTTTTGTTAGCAAAAAGTTTGAGCTTGATGATGTGATTGAAGCTCAACAATTTGATAGAGAGATTCTCAATTATATTTTTGAAGTTGCACTTGATATGGAAAAGATTGAAAAAAGTTCATCTAAAAGCCAAATGCTGAAGGGATATTTGATGGCTACCCTGTTCTACGAGCCCTCAACTAGAACTAGGCTTTCGTTTGAATCTGCCATGAAAAGGTTAGGTGGGGAGGTATTGACAACTGAAAATGCGCGGGAGTTTTCTTCAGCAGCCAAAGGAGAAACCCTTGAAGATACGATCCGAACTGTTGAGGGATACTCGGATATAATTGTGATGCGGCATTTTGAAAGTGGTGCTGCTAAGAAAGCTGCTGCAACAGCTAGCATTCCTATTATTAATGCTGGTGATGGTCCTGGACAACATCCAACTCAGGCTCTTCTAGATGTATATACTATTCAGAGAGAGATAGGAAAACTTGATGGAATTAAAGTCGGGCTCGTGGGAGATCTTGCTAATGGGAGAACTGATGATATAAAAGACTATTTGACATCACAAGATGTGAAATGGGAAGAATGCGACAACTTGATGGAAGTTGCGTCAGAGTGTGATGTTGTATATCAAACTCGTATTCAGCGGGAAAGATTTGGAGAGAGGGTTGATCTTTATGAACAAGCTAGAGGCAAGTACATTGTGGATAAAAATGTGTTAAAAGTGATGCAAAGACATGCTGTGGTCATGCACCCCCTCCCTAGGCTTGATGAGATCACTGTTGATGTAGATGAGGATCCAAGGGCTGCCTACTTCCGGCAAGCAAAGAATGGTCTCTATATTCGGATGGCACTCGTGAAACTCTTGCTACTTGAGATATCAAAAGACATGAACAAGTTCAAGAAATCAGAAATTCTTGTGCTTTTAGGCCTCACAATGCTTCTAGTAATAACTCCTCTTCTTTCCTCATCCCTAAGACCTACATATCTCTACTTCATCTTCAACCTCCTCATCATTGCCCTTGGAGCCCAAGCTGGGCTTCTCTCATCAGCTCATCCTCCTCATCAACACAACACCAACAACCTTTCTCTAACTTCACCCCAAACCTTCACCAAGAAGCACCGGACTTTGGAGAACCCTCACTCCGACAAGATTCCCTCCCCCAATGTCAAAATGGAATCGTCTCTTAACAACTGTCCCTCCGCTTCCAGTATTTTCTATATTGGAGAGGGCGACAGCGAGGCGGAGGACACGACCGCGGTCGAGGAGGTGGAAGAGGAGGTTGGCAGCGCCGGAAATAATGGCCAAGAATTGTTTGCTCAAGCTGAGACGTTTATTGGGAACTTCTATAAGCAGTTGAAGATGCAGAAAGAAGAGTCTTGGAAAAACATTCATGGTTTCTATCAGAAACACTTTTGA 2997 43.94 MASSTTESSRILHEIETLKSAKSDLERRISALESQLHDLNHPHNNGVCNASSTSPSAFPHGLSPDMIYRYSRHLLLPSFGVQGQLRLSKSSILVVGAGGLGSPALLYLAASGVGRLGIVDHDVVELNNMHRQIIHTEAYIGRSKVESAAATCRSINSTVEIVEHKEALRTSNALEIFSKYDIIVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQFTIIMEVRATDAYFQLLHRQQRAKVPGIIGCLQALEAIKLSSAVGEPLSGRMLLFDALAARIRIVKIRGRSLQCEVCGENSKFKAAQFQEFDYEKFTQSPLSTSPLRLKLLEPNSRISAKEYGDRLRNGESHVLVDVRPEHHFKIVSLPNSLNIPLASLDGRLEEVVSALKEEEHKQSSESSGADVQLYVVCRRGNDSQRAVKYLQEKGFPSAKDIIGGLEGWAHEDIFDIKMAASSSLMAHSLHAHASTETAIKCCKGYMYGNSRIGYSKSKFLTSPKFSHDENSSKWECIEKRPMRNEIRCRAVEIENSLSPFVSKKFELDDVIEAQQFDREILNYIFEVALDMEKIEKSSSKSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAAKKAAATASIPIINAGDGPGQHPTQALLDVYTIQREIGKLDGIKVGLVGDLANGRTDDIKDYLTSQDVKWEECDNLMEVASECDVVYQTRIQRERFGERVDLYEQARGKYIVDKNVLKVMQRHAVVMHPLPRLDEITVDVDEDPRAAYFRQAKNGLYIRMALVKLLLLEISKDMNKFKKSEILVLLGLTMLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAHPPHQHNTNNLSLTSPQTFTKKHRTLENPHSDKIPSPNVKMESSLNNCPSASSIFYIGEGDSEAEDTTAVEEVEEEVGSAGNNGQELFAQAETFIGNFYKQLKMQKEESWKNIHGFYQKHF 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6422360 6438554 + ClCG10G005220.2 Cla10g00489 282148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00489 998 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 586 593 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cla10g00489 998 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 62 419 IPR035985 GO:0008641
Cla10g00489 998 PRINTS Aspartate carbamoyltransferase signature 576 598 - -
Cla10g00489 998 PRINTS Aspartate carbamoyltransferase signature 797 811 - -
Cla10g00489 998 PRINTS Aspartate carbamoyltransferase signature 616 625 - -
Cla10g00489 998 PRINTS Aspartate carbamoyltransferase signature 670 687 - -
Cla10g00489 998 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 709 814 IPR006131 GO:0006520|GO:0016597|GO:0016743
Cla10g00489 998 Gene3D - 333 448 IPR036873 -
Cla10g00489 998 Gene3D Aspartate/ornithine carbamoyltransferase 543 670 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cla10g00489 998 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 781 804 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cla10g00489 998 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 771 780 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cla10g00489 998 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 586 605 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cla10g00489 998 Coils Coil 374 394 - -
Cla10g00489 998 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 542 683 IPR006132 GO:0006520|GO:0016743
Cla10g00489 998 ProSiteProfiles Rhodanese domain profile. 346 446 IPR001763 -
Cla10g00489 998 Coils Coil 15 35 - -
Cla10g00489 998 PANTHER ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN 451 705 - -
Cla10g00489 998 PANTHER ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN 706 817 - -
Cla10g00489 998 SMART rhod_4 336 447 IPR001763 -
Cla10g00489 998 Pfam Cotton fibre expressed protein 962 992 IPR008480 -
Cla10g00489 998 Pfam ThiF family 70 293 IPR000594 -
Cla10g00489 998 Pfam Rhodanese-like domain 336 443 IPR001763 -
Cla10g00489 998 Gene3D Aspartate/ornithine carbamoyltransferase 706 803 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cla10g00489 998 Gene3D - 64 301 - -
Cla10g00489 998 Gene3D Aspartate/ornithine carbamoyltransferase 671 705 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cla10g00489 998 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 540 816 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cla10g00489 998 CDD ThiF_MoeB_HesA_family 69 285 - -
Cla10g00489 998 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 451 705 - -
Cla10g00489 998 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 706 817 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00489 K11996 MOCS3, UBA4; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] - csv:101220467 729.169
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00264 Cla-Chr4:8413648 Cla10g00489 Cla-Chr10:6422360 1.45E-16 dispersed
Cla05g00255 Cla-Chr5:2334269 Cla10g00489 Cla-Chr10:6422360 1.12E-11 dispersed
Cla05g01923 Cla-Chr5:31072100 Cla10g00489 Cla-Chr10:6422360 7.24E-17 dispersed
Cla10g00489 Cla-Chr10:6422360 Cla04g00265 Cla-Chr4:8418187 7.85E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g01054 . 1255 1570 Sulfurtransferasese/Rhodanese AT1G79230 75.6 5.1e-146 514.2
Cla05g01054 . 1255 1519 Sulfurtransferasese/Rhodanese AT1G16460 73.6 2.1e-113 405.6
Cla04g01122 . 97 373 Sulfurtransferasese/Rhodanese AT5G23060 60.5 2.3e-82 302.8
Cla05g00105 . 675 1135 Sulfurtransferasese/Rhodanese AT4G01050 51.7 4.2e-118 422.2
Cla01g01100 . 6 657 Sulfurtransferasese/Rhodanese AT1G09280 52.7 8.6e-184 640.6
Cla07g00499 . 84 436 Sulfurtransferasese/Rhodanese AT2G40760 75.6 1.6e-156 549.7
Cla10g01457 . 570 1023 Sulfurtransferasese/Rhodanese AT1G17850 52.3 3.4e-132 468.8
Cla04g00101 . 30 235 Sulfurtransferasese/Rhodanese AT2G42220 73.8 9.7e-86 313.5
Cla10g02091 . 488 668 Sulfurtransferasese/Rhodanese AT3G08920 63.0 1.9e-64 242.7
Cla06g01706 . 1 303 Sulfurtransferasese/Rhodanese AT4G24750 64.4 1.0e-108 390.2
Cla02g02209 . 67 271 Sulfurtransferasese/Rhodanese AT5G19370 63.8 3.0e-71 265.8
Cla10g00489 . 113 442 Sulfurtransferasese/Rhodanese AT5G55130 64.9 3.2e-120 428.7
Cla05g00987 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.0 3.2e-78 288.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009966 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00489 Cla_Chr10 FPKM 0.0 0.0 0.0 0.0 0.79314 0.0 0.906153 0.0 0.531385 0.314865