Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00491 ATGGTCTCCCACAGACCCTTCTCCTTCAGCTTCTTCTTCCTCTTCTTCTTCCCAATTTTGTTTAGGGTTTCAAATTCTTCCTTAGTTCCAGCAATCTACGTGTTTGGAGACTCATTAGTGGATGTTGGAAACAACAACCACTTGAAGCTCTCACTAGCCAAAGCCAACTTTCCCCACAATGGACTTGATTTTCCTACCAACAAGCCCACCGGAAGGTTCTCTAATGGCAAGAATGCTGCCGACTATATTGCTGAGAAGGTGGGGTTGCCGACTTCGCCGCCATATTTGTCTCTCATATCCAAGTTTAGAAAGATTATCAATACGACACCGTTTAAGACAGGCGTCAGCTTCGCTTCTGGAGGAGCCGGAATTTTTAATGAAACAAATAATCTTTTTAAACAATCGGTGGCAATGGACCAACAAATAGTGTTCTATTCAACGGTGTACAAAAATCTGGTAGGAGAGCTGGGATCGTCTGGAGCGGAAGCACACCTATCCAAATCTCTATTTACGGTTGTGATTGGAAGTAATGACATCTTCGGCTATCATCAGTCATCCGATCTGCGTAATAAGTACTCCCCACAGCAATACTTGGACTTGATGGCCTCCACTCTGGAGTCGCAGCTTAAGTCTCAAGCTGCCGCCGCCACCTCTCCGTGTGGTTGCCGCCGTCTTCCACCCGATCGCCGTCGCCGGTTGTCGCTGTTGCTTGTTCTCTTAGTGGGTAAGAGTTTTTTTTTTGTGTCGTTGCGGCCTCCGTCGGAGTCTCAAGTCTGTCCTACTTTCCGGTTCAGGAAGATGGAATCCTCCGTGATAGCAGCTGAGCGCATTCTTTCGTATAATTTCAAGAACAAGAAGCTCTTAGAAGAAGCACTCACCCACTCCTCCTACTTCGACTCTGCCTCCTATGAGCGCCTCGAGTTTATCGGCGATTCAGCTATTGGCCTCGCTATTACCAATTATTTCTTTCTTGCTTATCCAGACCTCCATCAAGGCCAACTATCTTTACTTAGGGCTGCTAACATTAGCACCGAGAAGCTTGCTCGTGTTGCAGTCCGCCATGGATTGTATAACTATGTTAGGCGCAACGCCGCCGCTCTCGATGACAAGGTTAGAGAGTTCGTCGATTCCGTGGCCCTAGAACATAACTCAGTTCCGTATGGTGGGTTGGTGAAGGCTCCTAAAGTTCTTGCTGACATTGTGGAATCTGTAGCTGGTGCTGTCTATGTAGATGTTAATTTTGATCTTCAAACACTATGGGTGATAATTAGGGGTTTGTTAGAGCCTATCTATACTCTTGAAGACTTACAAGTAGAGCCCCAACCTGTAACTGTGCTCTTTGAAGTTTGCCAAAAAAATGGGAAGCAGGTAGATATCAAGAATTGGAAAAACGGTTCCAAGAACGTTGCAAGTGTTTATGTCGACGGTAGTTTTGTTGCTTCCGGCACTTCAATGCAAAAAGAAATTGCAAGGCTTAATGCTGCTAGAGAAGCTCTCATTAAATTGTCGGATTTCATGGACACCAGAATTAGAACAGTTGTAACTATTGATGGTATTGATGAATCGTTTGAGATTGAAGGGGCAAAGCATAAGCTACATGATTTTTGTTGCAAGAAAAAGTGGCCGAAACCAAATTACAGTACTGAGAAAGATTTAGGACCTTCACATGAAAGGAGATTTGTTTGCTCTGTTAAGATTTCCACTTCTTCCGGTACGCTCTATATGATGGGAGATGAGAAGTCAAGAGTAAAGGATGCAGAGAATTCTGCAGCCTCTTTGATGATTCGTGCTTTACAGGAAAGAAACTATCTCTAA 1815 44.52 MVSHRPFSFSFFFLFFFPILFRVSNSSLVPAIYVFGDSLVDVGNNNHLKLSLAKANFPHNGLDFPTNKPTGRFSNGKNAADYIAEKVGLPTSPPYLSLISKFRKIINTTPFKTGVSFASGGAGIFNETNNLFKQSVAMDQQIVFYSTVYKNLVGELGSSGAEAHLSKSLFTVVIGSNDIFGYHQSSDLRNKYSPQQYLDLMASTLESQLKSQAAAATSPCGCRRLPPDRRRRLSLLLVLLVGKSFFFVSLRPPSESQVCPTFRFRKMESSVIAAERILSYNFKNKKLLEEALTHSSYFDSASYERLEFIGDSAIGLAITNYFFLAYPDLHQGQLSLLRAANISTEKLARVAVRHGLYNYVRRNAAALDDKVREFVDSVALEHNSVPYGGLVKAPKVLADIVESVAGAVYVDVNFDLQTLWVIIRGLLEPIYTLEDLQVEPQPVTVLFEVCQKNGKQVDIKNWKNGSKNVASVYVDGSFVASGTSMQKEIARLNAAREALIKLSDFMDTRIRTVVTIDGIDESFEIEGAKHKLHDFCCKKKWPKPNYSTEKDLGPSHERRFVCSVKISTSSGTLYMMGDEKSRVKDAENSAASLMIRALQERNYL 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6447918 6471355 - ClCG10G005250.2 Cla10g00491 282150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00491 604 ProSiteProfiles Ribonuclease III family domain profile. 271 413 IPR000999 GO:0004525|GO:0006396
Cla10g00491 604 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 441 504 IPR014720 -
Cla10g00491 604 Gene3D - 438 508 - -
Cla10g00491 604 PANTHER RIBONUCLEASE 3-LIKE PROTEIN 2-RELATED 273 595 - -
Cla10g00491 604 SMART DRBM_3 528 599 IPR014720 -
Cla10g00491 604 SMART DRBM_3 442 503 IPR014720 -
Cla10g00491 604 CDD RIBOc 286 436 IPR000999 GO:0004525|GO:0006396
Cla10g00491 604 Gene3D - 526 601 - -
Cla10g00491 604 Pfam Ribonuclease III domain 304 411 IPR000999 GO:0004525|GO:0006396
Cla10g00491 604 Pfam Double-stranded RNA binding motif 528 598 IPR014720 -
Cla10g00491 604 Pfam Double-stranded RNA binding motif 442 502 IPR014720 -
Cla10g00491 604 SUPERFAMILY dsRNA-binding domain-like 395 502 - -
Cla10g00491 604 PANTHER DICER-RELATED 273 595 - -
Cla10g00491 604 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 527 600 IPR014720 -
Cla10g00491 604 Pfam GDSL-like Lipase/Acylhydrolase 32 211 IPR001087 GO:0016788
Cla10g00491 604 SUPERFAMILY RNase III domain-like 270 433 IPR036389 GO:0004525|GO:0006396
Cla10g00491 604 SMART riboneu5 286 436 IPR000999 GO:0004525|GO:0006396
Cla10g00491 604 Gene3D Ribonuclease III domain 262 433 IPR036389 GO:0004525|GO:0006396
Cla10g00491 604 SUPERFAMILY dsRNA-binding domain-like 527 602 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00491 - - - csv:101206949 566.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00491 Cla-Chr10:6447918 Cla05g01213 Cla-Chr5:13615799 2.02E-33 dispersed
Cla10g00491 Cla-Chr10:6447918 Cla10g00493 Cla-Chr10:6496208 1.59E-55 proximal
Cla03g01005 Cla-Chr3:19015202 Cla10g00491 Cla-Chr10:6447918 2.83E-27 transposed
Cla05g00003 Cla-Chr5:65016 Cla10g00491 Cla-Chr10:6447918 6.16E-09 transposed
Cla06g01204 Cla-Chr6:25223034 Cla10g00491 Cla-Chr10:6447918 3.77E-27 transposed
Cla08g00979 Cla-Chr8:22465728 Cla10g00491 Cla-Chr10:6447918 3.77E-06 transposed
Cla11g00930 Cla-Chr11:16122364 Cla10g00491 Cla-Chr10:6447918 2.62E-36 transposed
Cla10g00491 Cla-Chr10:6447918 Cla02g00208 Cla-Chr2:2172592 1.17E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00491 Cla_Chr10 FPKM 17.973333 25.91601 15.545906 17.803577 15.738182 18.370901 13.938056 9.975009 5.125471 7.077739