Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00494 ATGGCCAACAAATTGGGACCTCCTAATTCTTCTATCCTTTCCTCTCTCCTCTTCCTCACTTTGATCATCAGAACTAGTTTAGCGGCTAATAATCTCAACGACAATGTGTTAGAATGGGTGAAGAAGGACCATCGTCGTTTTCTCCGTGCTGTTATTTACGTCTCCAATCTAGACCGTTCTGTTAGGAACTTCCCAGATCGTCAATACAAGGACGCCCTCATTGGGTTTGGGCCTCAAAATACTCACTTTTTGTTAGAACTAAGACATCATAAAATATGTCTCAATAATATAATCTTTGGTCTCAAATTTTCAGGACATGATTCGAATGATGTATTTATTGGGACAGAGTTTGGACATTTTGGGATTGCCACTCAAGATGTCTACAAATCTGTGGAGAAAGCTCGAGCAAATGGTGCATTGGTGATCCACAAGCCCCAAAAAGTTAACCAAACCATCGTTGCCTTTGTGCAAGATCGTGATGGCTATAAGTTTAAGCTCATTCAAAGGACTTCTTTAACTGATCCTCTTGTTCAAATCATGCTTCATGTACAAGATTTGAATCCTTCCCTCAACTTCTATACAAAGGCATTGGGAATGAAGTTGTTTGAAAGGCAAAACAATTCAACAGGACAGATTGTTTCGGGGACTTTGGGTTATGGAATAAACCAAAGTAAAACAACAGTGTTGCAATTGGAGAAAAGGAAAAACATCCCTCGTGATGATGGACGAGATGGCTATTCAATGGTGTATATTGGTACTGACAACGTAAACAAGAGTGCTGAAGCTGCTAAGTTGGTAATGAAAGAGCTTGGTGGTAACATAGTAATCGAGCCGGTTCTTTTGTCCAATATCAATGTCAAATTAACTGGCTTTAGTGACCCAGATAATTGGATAACGATTATGGTTGACAATAAAGATTATCAAAGAGGAACACTATAA 939 39.08 MANKLGPPNSSILSSLLFLTLIIRTSLAANNLNDNVLEWVKKDHRRFLRAVIYVSNLDRSVRNFPDRQYKDALIGFGPQNTHFLLELRHHKICLNNIIFGLKFSGHDSNDVFIGTEFGHFGIATQDVYKSVEKARANGALVIHKPQKVNQTIVAFVQDRDGYKFKLIQRTSLTDPLVQIMLHVQDLNPSLNFYTKALGMKLFERQNNSTGQIVSGTLGYGINQSKTTVLQLEKRKNIPRDDGRDGYSMVYIGTDNVNKSAEAAKLVMKELGGNIVIEPVLLSNINVKLTGFSDPDNWITIMVDNKDYQRGTL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6508037 6517296 + ClCG10G005290.1 Cla10g00494 282153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00494 312 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 178 222 IPR004360 -
Cla10g00494 312 PANTHER LACTOYLGLUTATHIONE LYASE 32 308 - -
Cla10g00494 312 PANTHER LACTOYLGLUTATHIONE LYASE GLX1 32 308 - -
Cla10g00494 312 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 177 299 IPR029068 -
Cla10g00494 312 ProSitePatterns Glyoxalase I signature 1. 178 199 IPR018146 GO:0004462|GO:0046872
Cla10g00494 312 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 175 304 IPR037523 -
Cla10g00494 312 Gene3D - 172 310 IPR029068 -
Cla10g00494 312 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 46 171 IPR029068 -
Cla10g00494 312 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 46 169 IPR037523 -
Cla10g00494 312 Gene3D - 21 171 IPR029068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00494 K01759 GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5] - csv:101203268 488.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00494 Cla-Chr10:6508037 Cla11g00208 Cla-Chr11:2419136 2.83E-58 dispersed
Cla10g00492 Cla-Chr10:6485298 Cla10g00494 Cla-Chr10:6508037 8.89E-146 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008029 0 2 0 0 0 2 1 2 2 1 2 2 1 1 2 1 2 0 1 2 2 1 2 0 2 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00494 Cla_Chr10 FPKM 83.294228 96.067337 59.26717 54.844673 18.46438 22.300549 14.820127 102.154335 108.759834 89.253708